Need: clip/select/cut/subset (or just show) the values of a USA raster including the Contiguous US, Alaska...





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GIS people, I need to clip/select/cut/subset (or just show) the values of a USA raster including the mainland, Alaska and Hawaii. It is confusing to see the big map including some Islands or territories very far away. So, I have been trying to select/cut the raster to only include USA mainland, Alaska and Hawaii and then do the visualization. The code I have developed is as follow:



library(rgdal)
library(raster)

state <- getData("GADM", country="USA", level=1)
projection(state) <- CRS("+proj=longlat +datum=WGS84 +no_defs +ellps=WGS84 +towgs84=0,0,0")

nestates <- c("Alabama","Arizona", "Arkansas", "California", "Colorado", # Contiguous/Continental United States
"Connecticut", "Delaware", "Florida", "Georgia", "Idaho",
"Illinois", "Indiana", "Iowa", "Kansas", "Kentucky",
"Louisiana", "Maine", "Maryland", "Massachusetts",
"Michigan", "Minnesota", "Mississippi", "Missouri",
"Montana", "Nebraska", "Nevada", "New Hampshire", "New
Jersey", "New Mexico", "New York", "North Carolina",
"North Dakota", "Ohio", "Oklahoma", "Oregon",
"Pennsylvania", "Rhode Island","South Carolina",
"South Dakota", "Tennessee", "Texas", "Utah", "Vermont",
"Virginia", "Washington", "West Virginia", "Wisconsin",
"Wyoming",
"Alaska", "Hawaii") # I tried excluding Hawaii too

# I believe the issue is with insular territories

state.sub <- state[as.character(state@data$STATE_NAME) %in% nestates, ]

elevation <- raster("USA_1.tif")

elevation.sub <- crop(elevation, extent(state.sub))

elevation.sub <- mask(elevation.sub, state.sub) # Error in x@polygons[[i]] : subscript out of bounds

plot(elevation.sub)
plot(state.sub, add = TRUE)


The output, so far:
enter image description here



The reproducible example:



Need something like this:
enter image description here



I already tried this, this and this ones.



Any help is very much appreciated.










share|improve this question





























    1















    GIS people, I need to clip/select/cut/subset (or just show) the values of a USA raster including the mainland, Alaska and Hawaii. It is confusing to see the big map including some Islands or territories very far away. So, I have been trying to select/cut the raster to only include USA mainland, Alaska and Hawaii and then do the visualization. The code I have developed is as follow:



    library(rgdal)
    library(raster)

    state <- getData("GADM", country="USA", level=1)
    projection(state) <- CRS("+proj=longlat +datum=WGS84 +no_defs +ellps=WGS84 +towgs84=0,0,0")

    nestates <- c("Alabama","Arizona", "Arkansas", "California", "Colorado", # Contiguous/Continental United States
    "Connecticut", "Delaware", "Florida", "Georgia", "Idaho",
    "Illinois", "Indiana", "Iowa", "Kansas", "Kentucky",
    "Louisiana", "Maine", "Maryland", "Massachusetts",
    "Michigan", "Minnesota", "Mississippi", "Missouri",
    "Montana", "Nebraska", "Nevada", "New Hampshire", "New
    Jersey", "New Mexico", "New York", "North Carolina",
    "North Dakota", "Ohio", "Oklahoma", "Oregon",
    "Pennsylvania", "Rhode Island","South Carolina",
    "South Dakota", "Tennessee", "Texas", "Utah", "Vermont",
    "Virginia", "Washington", "West Virginia", "Wisconsin",
    "Wyoming",
    "Alaska", "Hawaii") # I tried excluding Hawaii too

    # I believe the issue is with insular territories

    state.sub <- state[as.character(state@data$STATE_NAME) %in% nestates, ]

    elevation <- raster("USA_1.tif")

    elevation.sub <- crop(elevation, extent(state.sub))

    elevation.sub <- mask(elevation.sub, state.sub) # Error in x@polygons[[i]] : subscript out of bounds

    plot(elevation.sub)
    plot(state.sub, add = TRUE)


    The output, so far:
    enter image description here



    The reproducible example:



    Need something like this:
    enter image description here



    I already tried this, this and this ones.



    Any help is very much appreciated.










    share|improve this question

























      1












      1








      1


      1






      GIS people, I need to clip/select/cut/subset (or just show) the values of a USA raster including the mainland, Alaska and Hawaii. It is confusing to see the big map including some Islands or territories very far away. So, I have been trying to select/cut the raster to only include USA mainland, Alaska and Hawaii and then do the visualization. The code I have developed is as follow:



      library(rgdal)
      library(raster)

      state <- getData("GADM", country="USA", level=1)
      projection(state) <- CRS("+proj=longlat +datum=WGS84 +no_defs +ellps=WGS84 +towgs84=0,0,0")

      nestates <- c("Alabama","Arizona", "Arkansas", "California", "Colorado", # Contiguous/Continental United States
      "Connecticut", "Delaware", "Florida", "Georgia", "Idaho",
      "Illinois", "Indiana", "Iowa", "Kansas", "Kentucky",
      "Louisiana", "Maine", "Maryland", "Massachusetts",
      "Michigan", "Minnesota", "Mississippi", "Missouri",
      "Montana", "Nebraska", "Nevada", "New Hampshire", "New
      Jersey", "New Mexico", "New York", "North Carolina",
      "North Dakota", "Ohio", "Oklahoma", "Oregon",
      "Pennsylvania", "Rhode Island","South Carolina",
      "South Dakota", "Tennessee", "Texas", "Utah", "Vermont",
      "Virginia", "Washington", "West Virginia", "Wisconsin",
      "Wyoming",
      "Alaska", "Hawaii") # I tried excluding Hawaii too

      # I believe the issue is with insular territories

      state.sub <- state[as.character(state@data$STATE_NAME) %in% nestates, ]

      elevation <- raster("USA_1.tif")

      elevation.sub <- crop(elevation, extent(state.sub))

      elevation.sub <- mask(elevation.sub, state.sub) # Error in x@polygons[[i]] : subscript out of bounds

      plot(elevation.sub)
      plot(state.sub, add = TRUE)


      The output, so far:
      enter image description here



      The reproducible example:



      Need something like this:
      enter image description here



      I already tried this, this and this ones.



      Any help is very much appreciated.










      share|improve this question














      GIS people, I need to clip/select/cut/subset (or just show) the values of a USA raster including the mainland, Alaska and Hawaii. It is confusing to see the big map including some Islands or territories very far away. So, I have been trying to select/cut the raster to only include USA mainland, Alaska and Hawaii and then do the visualization. The code I have developed is as follow:



      library(rgdal)
      library(raster)

      state <- getData("GADM", country="USA", level=1)
      projection(state) <- CRS("+proj=longlat +datum=WGS84 +no_defs +ellps=WGS84 +towgs84=0,0,0")

      nestates <- c("Alabama","Arizona", "Arkansas", "California", "Colorado", # Contiguous/Continental United States
      "Connecticut", "Delaware", "Florida", "Georgia", "Idaho",
      "Illinois", "Indiana", "Iowa", "Kansas", "Kentucky",
      "Louisiana", "Maine", "Maryland", "Massachusetts",
      "Michigan", "Minnesota", "Mississippi", "Missouri",
      "Montana", "Nebraska", "Nevada", "New Hampshire", "New
      Jersey", "New Mexico", "New York", "North Carolina",
      "North Dakota", "Ohio", "Oklahoma", "Oregon",
      "Pennsylvania", "Rhode Island","South Carolina",
      "South Dakota", "Tennessee", "Texas", "Utah", "Vermont",
      "Virginia", "Washington", "West Virginia", "Wisconsin",
      "Wyoming",
      "Alaska", "Hawaii") # I tried excluding Hawaii too

      # I believe the issue is with insular territories

      state.sub <- state[as.character(state@data$STATE_NAME) %in% nestates, ]

      elevation <- raster("USA_1.tif")

      elevation.sub <- crop(elevation, extent(state.sub))

      elevation.sub <- mask(elevation.sub, state.sub) # Error in x@polygons[[i]] : subscript out of bounds

      plot(elevation.sub)
      plot(state.sub, add = TRUE)


      The output, so far:
      enter image description here



      The reproducible example:



      Need something like this:
      enter image description here



      I already tried this, this and this ones.



      Any help is very much appreciated.







      r raster r-raster sp rgdal






      share|improve this question













      share|improve this question











      share|improve this question




      share|improve this question










      asked Jan 3 at 16:58









      Diego MoyaDiego Moya

      327




      327
























          2 Answers
          2






          active

          oldest

          votes


















          2
















          As an alternative, consider that package spData provides polygon boundaries for the
          US already splitted for contigouous US, Alaska, Hawaii and other islands that
          you can use directly. For example, using an elevation raster downloaded with
          raster::getData:



          library(spData)
          library(sf)
          library(raster)

          elev <- raster::getData("alt", country="USA", level=1)
          #> returning a list of RasterLayer objects
          usa <- spData::us_states %>% sf::st_transform(4326)
          hawaii <- spData::hawaii %>% sf::st_transform(4326)
          alaska <- spData::alaska %>% sf::st_transform(4326)

          # crop raster to area of interest and plot (Note that the data downloaded with `raster::getData`
          # is split in four subdatasets, so in this case you need to select the correct one.)
          usa_elev <- crop(elev[[1]], usa)
          plot(usa_elev)
          plot(sf::st_geometry(usa), add = TRUE)




          alaska_elev <- crop(elev[[2]], alaska)
          plot(alaska_elev)
          plot(st_geometry(alaska), add = TRUE)




          hawaii_elev <- crop(elev[[4]], hawaii)
          plot(hawaii_elev)
          plot(st_geometry(hawaii), add = TRUE)




          Created on 2019-01-04 by the reprex package (v0.2.1)






          share|improve this answer
























          • Great solution! sorry for the late comment.

            – Diego Moya
            Jan 29 at 23:18



















          0














          I have solved it in this way:



          us<-getData('GADM', country='USA', level=1)  #Get the County Shapefile for the US

          nestates <- c("Alabama","Arizona","Arkansas","California","Colorado","Connecticut","Delaware","District of Columbia",
          "Florida","Georgia","Idaho","Illinois","Indiana","Iowa","Kansas","Kentucky","Louisiana","Maine","Maryland",
          "Massachusetts","Michigan","Minnesota","Mississippi","Missouri","Montana","Nebraska","Nevada","New Hampshire",
          "New Jersey","New Mexico","New York","North Carolina","North Dakota","Ohio","Oklahoma","Oregon","Pennsylvania",
          "Rhode Island","South Carolina","South Dakota","Tennessee","Texas","Utah","Vermont","Virginia","Washington",
          "West Virginia","Wisconsin","Wyoming")
          #"Alaska" polygons include the far away Islands #"Hawaii"
          # I followed these tutorials/Q&A
          #http://data-analytics.net/wp-content/uploads/2014/09/geo2.html
          #https://gis.stackexchange.com/questions/61243/clipping-a-raster-in-r/61278

          ne = us[match(toupper(nestates),toupper(us$NAME_1)),]
          raster_c <- crop(raster_1, extent(ne))


          I got this:



          enter image description here



          Hope it might help others






          share|improve this answer
























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            2 Answers
            2






            active

            oldest

            votes








            2 Answers
            2






            active

            oldest

            votes









            active

            oldest

            votes






            active

            oldest

            votes









            2
















            As an alternative, consider that package spData provides polygon boundaries for the
            US already splitted for contigouous US, Alaska, Hawaii and other islands that
            you can use directly. For example, using an elevation raster downloaded with
            raster::getData:



            library(spData)
            library(sf)
            library(raster)

            elev <- raster::getData("alt", country="USA", level=1)
            #> returning a list of RasterLayer objects
            usa <- spData::us_states %>% sf::st_transform(4326)
            hawaii <- spData::hawaii %>% sf::st_transform(4326)
            alaska <- spData::alaska %>% sf::st_transform(4326)

            # crop raster to area of interest and plot (Note that the data downloaded with `raster::getData`
            # is split in four subdatasets, so in this case you need to select the correct one.)
            usa_elev <- crop(elev[[1]], usa)
            plot(usa_elev)
            plot(sf::st_geometry(usa), add = TRUE)




            alaska_elev <- crop(elev[[2]], alaska)
            plot(alaska_elev)
            plot(st_geometry(alaska), add = TRUE)




            hawaii_elev <- crop(elev[[4]], hawaii)
            plot(hawaii_elev)
            plot(st_geometry(hawaii), add = TRUE)




            Created on 2019-01-04 by the reprex package (v0.2.1)






            share|improve this answer
























            • Great solution! sorry for the late comment.

              – Diego Moya
              Jan 29 at 23:18
















            2
















            As an alternative, consider that package spData provides polygon boundaries for the
            US already splitted for contigouous US, Alaska, Hawaii and other islands that
            you can use directly. For example, using an elevation raster downloaded with
            raster::getData:



            library(spData)
            library(sf)
            library(raster)

            elev <- raster::getData("alt", country="USA", level=1)
            #> returning a list of RasterLayer objects
            usa <- spData::us_states %>% sf::st_transform(4326)
            hawaii <- spData::hawaii %>% sf::st_transform(4326)
            alaska <- spData::alaska %>% sf::st_transform(4326)

            # crop raster to area of interest and plot (Note that the data downloaded with `raster::getData`
            # is split in four subdatasets, so in this case you need to select the correct one.)
            usa_elev <- crop(elev[[1]], usa)
            plot(usa_elev)
            plot(sf::st_geometry(usa), add = TRUE)




            alaska_elev <- crop(elev[[2]], alaska)
            plot(alaska_elev)
            plot(st_geometry(alaska), add = TRUE)




            hawaii_elev <- crop(elev[[4]], hawaii)
            plot(hawaii_elev)
            plot(st_geometry(hawaii), add = TRUE)




            Created on 2019-01-04 by the reprex package (v0.2.1)






            share|improve this answer
























            • Great solution! sorry for the late comment.

              – Diego Moya
              Jan 29 at 23:18














            2












            2








            2









            As an alternative, consider that package spData provides polygon boundaries for the
            US already splitted for contigouous US, Alaska, Hawaii and other islands that
            you can use directly. For example, using an elevation raster downloaded with
            raster::getData:



            library(spData)
            library(sf)
            library(raster)

            elev <- raster::getData("alt", country="USA", level=1)
            #> returning a list of RasterLayer objects
            usa <- spData::us_states %>% sf::st_transform(4326)
            hawaii <- spData::hawaii %>% sf::st_transform(4326)
            alaska <- spData::alaska %>% sf::st_transform(4326)

            # crop raster to area of interest and plot (Note that the data downloaded with `raster::getData`
            # is split in four subdatasets, so in this case you need to select the correct one.)
            usa_elev <- crop(elev[[1]], usa)
            plot(usa_elev)
            plot(sf::st_geometry(usa), add = TRUE)




            alaska_elev <- crop(elev[[2]], alaska)
            plot(alaska_elev)
            plot(st_geometry(alaska), add = TRUE)




            hawaii_elev <- crop(elev[[4]], hawaii)
            plot(hawaii_elev)
            plot(st_geometry(hawaii), add = TRUE)




            Created on 2019-01-04 by the reprex package (v0.2.1)






            share|improve this answer















            As an alternative, consider that package spData provides polygon boundaries for the
            US already splitted for contigouous US, Alaska, Hawaii and other islands that
            you can use directly. For example, using an elevation raster downloaded with
            raster::getData:



            library(spData)
            library(sf)
            library(raster)

            elev <- raster::getData("alt", country="USA", level=1)
            #> returning a list of RasterLayer objects
            usa <- spData::us_states %>% sf::st_transform(4326)
            hawaii <- spData::hawaii %>% sf::st_transform(4326)
            alaska <- spData::alaska %>% sf::st_transform(4326)

            # crop raster to area of interest and plot (Note that the data downloaded with `raster::getData`
            # is split in four subdatasets, so in this case you need to select the correct one.)
            usa_elev <- crop(elev[[1]], usa)
            plot(usa_elev)
            plot(sf::st_geometry(usa), add = TRUE)




            alaska_elev <- crop(elev[[2]], alaska)
            plot(alaska_elev)
            plot(st_geometry(alaska), add = TRUE)




            hawaii_elev <- crop(elev[[4]], hawaii)
            plot(hawaii_elev)
            plot(st_geometry(hawaii), add = TRUE)




            Created on 2019-01-04 by the reprex package (v0.2.1)







            share|improve this answer












            share|improve this answer



            share|improve this answer










            answered Jan 4 at 21:19









            lbusettlbusett

            3,66921434




            3,66921434













            • Great solution! sorry for the late comment.

              – Diego Moya
              Jan 29 at 23:18



















            • Great solution! sorry for the late comment.

              – Diego Moya
              Jan 29 at 23:18

















            Great solution! sorry for the late comment.

            – Diego Moya
            Jan 29 at 23:18





            Great solution! sorry for the late comment.

            – Diego Moya
            Jan 29 at 23:18













            0














            I have solved it in this way:



            us<-getData('GADM', country='USA', level=1)  #Get the County Shapefile for the US

            nestates <- c("Alabama","Arizona","Arkansas","California","Colorado","Connecticut","Delaware","District of Columbia",
            "Florida","Georgia","Idaho","Illinois","Indiana","Iowa","Kansas","Kentucky","Louisiana","Maine","Maryland",
            "Massachusetts","Michigan","Minnesota","Mississippi","Missouri","Montana","Nebraska","Nevada","New Hampshire",
            "New Jersey","New Mexico","New York","North Carolina","North Dakota","Ohio","Oklahoma","Oregon","Pennsylvania",
            "Rhode Island","South Carolina","South Dakota","Tennessee","Texas","Utah","Vermont","Virginia","Washington",
            "West Virginia","Wisconsin","Wyoming")
            #"Alaska" polygons include the far away Islands #"Hawaii"
            # I followed these tutorials/Q&A
            #http://data-analytics.net/wp-content/uploads/2014/09/geo2.html
            #https://gis.stackexchange.com/questions/61243/clipping-a-raster-in-r/61278

            ne = us[match(toupper(nestates),toupper(us$NAME_1)),]
            raster_c <- crop(raster_1, extent(ne))


            I got this:



            enter image description here



            Hope it might help others






            share|improve this answer




























              0














              I have solved it in this way:



              us<-getData('GADM', country='USA', level=1)  #Get the County Shapefile for the US

              nestates <- c("Alabama","Arizona","Arkansas","California","Colorado","Connecticut","Delaware","District of Columbia",
              "Florida","Georgia","Idaho","Illinois","Indiana","Iowa","Kansas","Kentucky","Louisiana","Maine","Maryland",
              "Massachusetts","Michigan","Minnesota","Mississippi","Missouri","Montana","Nebraska","Nevada","New Hampshire",
              "New Jersey","New Mexico","New York","North Carolina","North Dakota","Ohio","Oklahoma","Oregon","Pennsylvania",
              "Rhode Island","South Carolina","South Dakota","Tennessee","Texas","Utah","Vermont","Virginia","Washington",
              "West Virginia","Wisconsin","Wyoming")
              #"Alaska" polygons include the far away Islands #"Hawaii"
              # I followed these tutorials/Q&A
              #http://data-analytics.net/wp-content/uploads/2014/09/geo2.html
              #https://gis.stackexchange.com/questions/61243/clipping-a-raster-in-r/61278

              ne = us[match(toupper(nestates),toupper(us$NAME_1)),]
              raster_c <- crop(raster_1, extent(ne))


              I got this:



              enter image description here



              Hope it might help others






              share|improve this answer


























                0












                0








                0







                I have solved it in this way:



                us<-getData('GADM', country='USA', level=1)  #Get the County Shapefile for the US

                nestates <- c("Alabama","Arizona","Arkansas","California","Colorado","Connecticut","Delaware","District of Columbia",
                "Florida","Georgia","Idaho","Illinois","Indiana","Iowa","Kansas","Kentucky","Louisiana","Maine","Maryland",
                "Massachusetts","Michigan","Minnesota","Mississippi","Missouri","Montana","Nebraska","Nevada","New Hampshire",
                "New Jersey","New Mexico","New York","North Carolina","North Dakota","Ohio","Oklahoma","Oregon","Pennsylvania",
                "Rhode Island","South Carolina","South Dakota","Tennessee","Texas","Utah","Vermont","Virginia","Washington",
                "West Virginia","Wisconsin","Wyoming")
                #"Alaska" polygons include the far away Islands #"Hawaii"
                # I followed these tutorials/Q&A
                #http://data-analytics.net/wp-content/uploads/2014/09/geo2.html
                #https://gis.stackexchange.com/questions/61243/clipping-a-raster-in-r/61278

                ne = us[match(toupper(nestates),toupper(us$NAME_1)),]
                raster_c <- crop(raster_1, extent(ne))


                I got this:



                enter image description here



                Hope it might help others






                share|improve this answer













                I have solved it in this way:



                us<-getData('GADM', country='USA', level=1)  #Get the County Shapefile for the US

                nestates <- c("Alabama","Arizona","Arkansas","California","Colorado","Connecticut","Delaware","District of Columbia",
                "Florida","Georgia","Idaho","Illinois","Indiana","Iowa","Kansas","Kentucky","Louisiana","Maine","Maryland",
                "Massachusetts","Michigan","Minnesota","Mississippi","Missouri","Montana","Nebraska","Nevada","New Hampshire",
                "New Jersey","New Mexico","New York","North Carolina","North Dakota","Ohio","Oklahoma","Oregon","Pennsylvania",
                "Rhode Island","South Carolina","South Dakota","Tennessee","Texas","Utah","Vermont","Virginia","Washington",
                "West Virginia","Wisconsin","Wyoming")
                #"Alaska" polygons include the far away Islands #"Hawaii"
                # I followed these tutorials/Q&A
                #http://data-analytics.net/wp-content/uploads/2014/09/geo2.html
                #https://gis.stackexchange.com/questions/61243/clipping-a-raster-in-r/61278

                ne = us[match(toupper(nestates),toupper(us$NAME_1)),]
                raster_c <- crop(raster_1, extent(ne))


                I got this:



                enter image description here



                Hope it might help others







                share|improve this answer












                share|improve this answer



                share|improve this answer










                answered Jan 3 at 21:15









                Diego MoyaDiego Moya

                327




                327






























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