Warning message in pec function using rfsrc model in R











up vote
0
down vote

favorite












I have used Random Survival Forest function from randomForestSRC package on a traindata and then to calculate Brier Score on testing set I have used pec function from pec package as follows:



PredError <- pec::pec(object=model,
formula=frmla, cens.model="cox",
data=testdata, verbose=F, maxtime=1000,testIBS=TRUE)


The function returns this warning message:



In fitter(X, Y, strata = Strata, offset = offset, weights = weights,  :
Ran out of iterations and did not converge


Can someone help me to understand the meaning?










share|improve this question


























    up vote
    0
    down vote

    favorite












    I have used Random Survival Forest function from randomForestSRC package on a traindata and then to calculate Brier Score on testing set I have used pec function from pec package as follows:



    PredError <- pec::pec(object=model,
    formula=frmla, cens.model="cox",
    data=testdata, verbose=F, maxtime=1000,testIBS=TRUE)


    The function returns this warning message:



    In fitter(X, Y, strata = Strata, offset = offset, weights = weights,  :
    Ran out of iterations and did not converge


    Can someone help me to understand the meaning?










    share|improve this question
























      up vote
      0
      down vote

      favorite









      up vote
      0
      down vote

      favorite











      I have used Random Survival Forest function from randomForestSRC package on a traindata and then to calculate Brier Score on testing set I have used pec function from pec package as follows:



      PredError <- pec::pec(object=model,
      formula=frmla, cens.model="cox",
      data=testdata, verbose=F, maxtime=1000,testIBS=TRUE)


      The function returns this warning message:



      In fitter(X, Y, strata = Strata, offset = offset, weights = weights,  :
      Ran out of iterations and did not converge


      Can someone help me to understand the meaning?










      share|improve this question













      I have used Random Survival Forest function from randomForestSRC package on a traindata and then to calculate Brier Score on testing set I have used pec function from pec package as follows:



      PredError <- pec::pec(object=model,
      formula=frmla, cens.model="cox",
      data=testdata, verbose=F, maxtime=1000,testIBS=TRUE)


      The function returns this warning message:



      In fitter(X, Y, strata = Strata, offset = offset, weights = weights,  :
      Ran out of iterations and did not converge


      Can someone help me to understand the meaning?







      r warnings survival-analysis






      share|improve this question













      share|improve this question











      share|improve this question




      share|improve this question










      asked yesterday









      Katherina

      105




      105





























          active

          oldest

          votes











          Your Answer






          StackExchange.ifUsing("editor", function () {
          StackExchange.using("externalEditor", function () {
          StackExchange.using("snippets", function () {
          StackExchange.snippets.init();
          });
          });
          }, "code-snippets");

          StackExchange.ready(function() {
          var channelOptions = {
          tags: "".split(" "),
          id: "1"
          };
          initTagRenderer("".split(" "), "".split(" "), channelOptions);

          StackExchange.using("externalEditor", function() {
          // Have to fire editor after snippets, if snippets enabled
          if (StackExchange.settings.snippets.snippetsEnabled) {
          StackExchange.using("snippets", function() {
          createEditor();
          });
          }
          else {
          createEditor();
          }
          });

          function createEditor() {
          StackExchange.prepareEditor({
          heartbeatType: 'answer',
          convertImagesToLinks: true,
          noModals: true,
          showLowRepImageUploadWarning: true,
          reputationToPostImages: 10,
          bindNavPrevention: true,
          postfix: "",
          imageUploader: {
          brandingHtml: "Powered by u003ca class="icon-imgur-white" href="https://imgur.com/"u003eu003c/au003e",
          contentPolicyHtml: "User contributions licensed under u003ca href="https://creativecommons.org/licenses/by-sa/3.0/"u003ecc by-sa 3.0 with attribution requiredu003c/au003e u003ca href="https://stackoverflow.com/legal/content-policy"u003e(content policy)u003c/au003e",
          allowUrls: true
          },
          onDemand: true,
          discardSelector: ".discard-answer"
          ,immediatelyShowMarkdownHelp:true
          });


          }
          });














           

          draft saved


          draft discarded


















          StackExchange.ready(
          function () {
          StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f53372258%2fwarning-message-in-pec-function-using-rfsrc-model-in-r%23new-answer', 'question_page');
          }
          );

          Post as a guest















          Required, but never shown






























          active

          oldest

          votes













          active

          oldest

          votes









          active

          oldest

          votes






          active

          oldest

          votes
















           

          draft saved


          draft discarded



















































           


          draft saved


          draft discarded














          StackExchange.ready(
          function () {
          StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f53372258%2fwarning-message-in-pec-function-using-rfsrc-model-in-r%23new-answer', 'question_page');
          }
          );

          Post as a guest















          Required, but never shown





















































          Required, but never shown














          Required, but never shown












          Required, but never shown







          Required, but never shown

































          Required, but never shown














          Required, but never shown












          Required, but never shown







          Required, but never shown







          Popular posts from this blog

          Can a sorcerer learn a 5th-level spell early by creating spell slots using the Font of Magic feature?

          Does disintegrating a polymorphed enemy still kill it after the 2018 errata?

          A Topological Invariant for $pi_3(U(n))$