Mixing
gnu parallel and resource management
I would like to use the gnu parallel command line to basically act as a simple scheduling mechanism.
in my case, i have N number of GPU's on a system and i would like to effectively queue a list of jobs onto those GPU's.
basically, i have a list of inputs and i would naively run
parallel --jobs=4 ./my_script.sh ::: cat list_of_things.txt ::: 0 1 2 3
where ./my_script.sh accepts two args the thing i want to process, and the GPU i want to process it on.
what i want is for each thing in the list, to just run on one of the gpus (0 thru 3).
however, this ends up just running each thing 4 times.
scheduling gnu-parallel
asked Jul 13 '18 at 23:55
yee379yee379
2,11353055
add a comment |
I would like to use the gnu parallel command line to basically act as a simple scheduling mechanism.
in my case, i have N number of GPU's on a system and i would like to effectively queue a list of jobs onto those GPU's.
basically, i have a list of inputs and i would naively run
parallel --jobs=4 ./my_script.sh ::: cat list_of_things.txt ::: 0 1 2 3
where ./my_script.sh accepts two args the thing i want to process, and the GPU i want to process it on.
what i want is for each thing in the list, to just run on one of the gpus (0 thru 3).
however, this ends up just running each thing 4 times.
scheduling gnu-parallel
asked Jul 13 '18 at 23:55
yee379yee379
2,11353055
add a comment |
I would like to use the gnu parallel command line to basically act as a simple scheduling mechanism.
in my case, i have N number of GPU's on a system and i would like to effectively queue a list of jobs onto those GPU's.
basically, i have a list of inputs and i would naively run
parallel --jobs=4 ./my_script.sh ::: cat list_of_things.txt ::: 0 1 2 3
where ./my_script.sh accepts two args the thing i want to process, and the GPU i want to process it on.
what i want is for each thing in the list, to just run on one of the gpus (0 thru 3).
however, this ends up just running each thing 4 times.
scheduling gnu-parallel
asked Jul 13 '18 at 23:55
yee379yee379
2,11353055
I would like to use the gnu parallel command line to basically act as a simple scheduling mechanism.
in my case, i have N number of GPU's on a system and i would like to effectively queue a list of jobs onto those GPU's.
basically, i have a list of inputs and i would naively run
parallel --jobs=4 ./my_script.sh ::: cat list_of_things.txt ::: 0 1 2 3
where ./my_script.sh accepts two args the thing i want to process, and the GPU i want to process it on.
what i want is for each thing in the list, to just run on one of the gpus (0 thru 3).
however, this ends up just running each thing 4 times.
scheduling gnu-parallel
scheduling gnu-parallel
asked Jul 13 '18 at 23:55
yee379yee379
2,11353055
asked Jul 13 '18 at 23:55
yee379yee379
2,11353055
asked Jul 13 '18 at 23:55
yee379yee379
2,11353055
asked Jul 13 '18 at 23:55
yee379yee379
2,11353055
asked Jul 13 '18 at 23:55
yee379yee379
2,11353055
2,11353055
add a comment |
add a comment |
1 Answer
1
active
oldest
votes
Try this:
parallel --jobs=4 ./my_script.sh {%} {} :::: list_of_things.txt
answered Nov 21 '18 at 21:56
Ole TangeOle Tange
19.5k35667
add a comment |
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1 Answer
1
active
oldest
votes
1 Answer
1
active
oldest
votes
active
oldest
votes
active
oldest
votes
Try this:
parallel --jobs=4 ./my_script.sh {%} {} :::: list_of_things.txt
answered Nov 21 '18 at 21:56
Ole TangeOle Tange
19.5k35667
add a comment |
Try this:
parallel --jobs=4 ./my_script.sh {%} {} :::: list_of_things.txt
answered Nov 21 '18 at 21:56
Ole TangeOle Tange
19.5k35667
add a comment |
Try this:
parallel --jobs=4 ./my_script.sh {%} {} :::: list_of_things.txt
answered Nov 21 '18 at 21:56
Ole TangeOle Tange
19.5k35667
Try this:
parallel --jobs=4 ./my_script.sh {%} {} :::: list_of_things.txt
answered Nov 21 '18 at 21:56
Ole TangeOle Tange
19.5k35667
answered Nov 21 '18 at 21:56
Ole TangeOle Tange
19.5k35667
answered Nov 21 '18 at 21:56
Ole TangeOle Tange
19.5k35667
answered Nov 21 '18 at 21:56
Ole TangeOle Tange
19.5k35667
19.5k35667
add a comment |
add a comment |
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