Error trying to index Pandas Dataframe with .iloc












0















I am facing a weird issue trying to index a row of my pandas dataframe. In the code below, the line self.df.iloc[index] raises the error below. I printed the values of index, index.numpy() and len(self.df) to verify that I am not exceeding the bounds. They give a value of tensor(640) 640 649. I tried indexing the dataframe with my own value which worked so I am not sure what the error is. I also posted this on the PyTorch forums since I am not sure where the error lies..




  • I am not exceeding the bounds

  • I can index using my own value (eg. 640)

  • I still cannot index it if I convert from tensor to numpy


Error message



Traceback (most recent call last):   File "train.py", line 532, in <module>
main(args) File "train.py", line 203, in main
for batch in train_loader: File "/usr/local/lib/python3.5/dist-packages/torch/utils/data/dataloader.py", line 336, in __next__
return self._process_next_batch(batch) File "/usr/local/lib/python3.5/dist-packages/torch/utils/data/dataloader.py", line 357, in _process_next_batch
raise batch.exc_type(batch.exc_msg) TypeError: Traceback (most recent call last): File "/usr/local/lib/python3.5/dist-packages/torch/utils/data/dataloader.py", line 106, in _worker_loop
samples = collate_fn([dataset[i] for i in batch_indices]) File "/usr/local/lib/python3.5/dist-packages/torch/utils/data/dataloader.py", line 106, in <listcomp>
samples = collate_fn([dataset[i] for i in batch_indices]) File "/home/HaziqBinRazali03/Trajectory Prediction/sgan-original/sgan/data/trajectories.py", line 204, in
__getitem__
df = self.df.iloc[b] File "/usr/local/lib/python3.5/dist-packages/pandas/core/indexing.py", line 1478, in __getitem__
return self._getitem_axis(maybe_callable, axis=axis) File "/usr/local/lib/python3.5/dist-packages/pandas/core/indexing.py", line 2091, in _getitem_axis
return self._get_list_axis(key, axis=axis) File "/usr/local/lib/python3.5/dist-packages/pandas/core/indexing.py", line 2070, in _get_list_axis
return self.obj._take(key, axis=axis) File "/usr/local/lib/python3.5/dist-packages/pandas/core/generic.py", line 2789, in _take
verify=True) File "/usr/local/lib/python3.5/dist-packages/pandas/core/internals.py", line 4537, in take
new_labels = self.axes[axis].take(indexer) File "/usr/local/lib/python3.5/dist-packages/pandas/core/indexes/base.py", line 2195, in take
return self._shallow_copy(taken) File "/usr/local/lib/python3.5/dist-packages/pandas/core/indexes/range.py", line 267, in _shallow_copy
return self._int64index._shallow_copy(values, **kwargs) File "/usr/local/lib/python3.5/dist-packages/pandas/core/indexes/numeric.py", line 68, in _shallow_copy
return self._shallow_copy_with_infer(values=values, **kwargs) File "/usr/local/lib/python3.5/dist-packages/pandas/core/indexes/base.py", line 538, in _shallow_copy_with_infer
if not len(values) and 'dtype' not in kwargs: TypeError: object of type 'numpy.int64' has no len()


The code snippet



   def __getitem__(self, index):

print(index, index.numpy(), len(self.df))

# get the row at index
df = self.df.iloc[index] # doesnt work
df = self.df.iloc[index.numpy()] # doesnt work
df = self.df.iloc[640] # works

# load the images and the label
pedestrian_images =
pedestrian_label = df["label"]
for full_filename in df["full_filename"]:
pedestrian_images.append(self.transform(Image.open(full_filename)))
pedestrian_images = torch.stack(pedestrian_images, 0)

return [pedestrian_images, pedestrian_label]


Part of the pandas dataframe



     unique_id  label                                      full_filename
0 112 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
1 606 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
2 327 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
3 385 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
4 736 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
5 634 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
6 534 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
7 61 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
8 40 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
9 124 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
10 165 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
11 97 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
12 559 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
13 98 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
14 190 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
15 360 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
16 478 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
17 737 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
18 633 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
19 362 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
20 95 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
21 375 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
22 301 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
23 729 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
24 240 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
25 312 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
26 537 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
27 786 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
28 585 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
29 443 0 [/home/HaziqBinRazali03/Trajectory Prediction/...









share|improve this question



























    0















    I am facing a weird issue trying to index a row of my pandas dataframe. In the code below, the line self.df.iloc[index] raises the error below. I printed the values of index, index.numpy() and len(self.df) to verify that I am not exceeding the bounds. They give a value of tensor(640) 640 649. I tried indexing the dataframe with my own value which worked so I am not sure what the error is. I also posted this on the PyTorch forums since I am not sure where the error lies..




    • I am not exceeding the bounds

    • I can index using my own value (eg. 640)

    • I still cannot index it if I convert from tensor to numpy


    Error message



    Traceback (most recent call last):   File "train.py", line 532, in <module>
    main(args) File "train.py", line 203, in main
    for batch in train_loader: File "/usr/local/lib/python3.5/dist-packages/torch/utils/data/dataloader.py", line 336, in __next__
    return self._process_next_batch(batch) File "/usr/local/lib/python3.5/dist-packages/torch/utils/data/dataloader.py", line 357, in _process_next_batch
    raise batch.exc_type(batch.exc_msg) TypeError: Traceback (most recent call last): File "/usr/local/lib/python3.5/dist-packages/torch/utils/data/dataloader.py", line 106, in _worker_loop
    samples = collate_fn([dataset[i] for i in batch_indices]) File "/usr/local/lib/python3.5/dist-packages/torch/utils/data/dataloader.py", line 106, in <listcomp>
    samples = collate_fn([dataset[i] for i in batch_indices]) File "/home/HaziqBinRazali03/Trajectory Prediction/sgan-original/sgan/data/trajectories.py", line 204, in
    __getitem__
    df = self.df.iloc[b] File "/usr/local/lib/python3.5/dist-packages/pandas/core/indexing.py", line 1478, in __getitem__
    return self._getitem_axis(maybe_callable, axis=axis) File "/usr/local/lib/python3.5/dist-packages/pandas/core/indexing.py", line 2091, in _getitem_axis
    return self._get_list_axis(key, axis=axis) File "/usr/local/lib/python3.5/dist-packages/pandas/core/indexing.py", line 2070, in _get_list_axis
    return self.obj._take(key, axis=axis) File "/usr/local/lib/python3.5/dist-packages/pandas/core/generic.py", line 2789, in _take
    verify=True) File "/usr/local/lib/python3.5/dist-packages/pandas/core/internals.py", line 4537, in take
    new_labels = self.axes[axis].take(indexer) File "/usr/local/lib/python3.5/dist-packages/pandas/core/indexes/base.py", line 2195, in take
    return self._shallow_copy(taken) File "/usr/local/lib/python3.5/dist-packages/pandas/core/indexes/range.py", line 267, in _shallow_copy
    return self._int64index._shallow_copy(values, **kwargs) File "/usr/local/lib/python3.5/dist-packages/pandas/core/indexes/numeric.py", line 68, in _shallow_copy
    return self._shallow_copy_with_infer(values=values, **kwargs) File "/usr/local/lib/python3.5/dist-packages/pandas/core/indexes/base.py", line 538, in _shallow_copy_with_infer
    if not len(values) and 'dtype' not in kwargs: TypeError: object of type 'numpy.int64' has no len()


    The code snippet



       def __getitem__(self, index):

    print(index, index.numpy(), len(self.df))

    # get the row at index
    df = self.df.iloc[index] # doesnt work
    df = self.df.iloc[index.numpy()] # doesnt work
    df = self.df.iloc[640] # works

    # load the images and the label
    pedestrian_images =
    pedestrian_label = df["label"]
    for full_filename in df["full_filename"]:
    pedestrian_images.append(self.transform(Image.open(full_filename)))
    pedestrian_images = torch.stack(pedestrian_images, 0)

    return [pedestrian_images, pedestrian_label]


    Part of the pandas dataframe



         unique_id  label                                      full_filename
    0 112 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
    1 606 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
    2 327 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
    3 385 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
    4 736 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
    5 634 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
    6 534 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
    7 61 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
    8 40 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
    9 124 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
    10 165 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
    11 97 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
    12 559 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
    13 98 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
    14 190 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
    15 360 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
    16 478 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
    17 737 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
    18 633 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
    19 362 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
    20 95 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
    21 375 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
    22 301 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
    23 729 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
    24 240 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
    25 312 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
    26 537 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
    27 786 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
    28 585 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
    29 443 0 [/home/HaziqBinRazali03/Trajectory Prediction/...









    share|improve this question

























      0












      0








      0








      I am facing a weird issue trying to index a row of my pandas dataframe. In the code below, the line self.df.iloc[index] raises the error below. I printed the values of index, index.numpy() and len(self.df) to verify that I am not exceeding the bounds. They give a value of tensor(640) 640 649. I tried indexing the dataframe with my own value which worked so I am not sure what the error is. I also posted this on the PyTorch forums since I am not sure where the error lies..




      • I am not exceeding the bounds

      • I can index using my own value (eg. 640)

      • I still cannot index it if I convert from tensor to numpy


      Error message



      Traceback (most recent call last):   File "train.py", line 532, in <module>
      main(args) File "train.py", line 203, in main
      for batch in train_loader: File "/usr/local/lib/python3.5/dist-packages/torch/utils/data/dataloader.py", line 336, in __next__
      return self._process_next_batch(batch) File "/usr/local/lib/python3.5/dist-packages/torch/utils/data/dataloader.py", line 357, in _process_next_batch
      raise batch.exc_type(batch.exc_msg) TypeError: Traceback (most recent call last): File "/usr/local/lib/python3.5/dist-packages/torch/utils/data/dataloader.py", line 106, in _worker_loop
      samples = collate_fn([dataset[i] for i in batch_indices]) File "/usr/local/lib/python3.5/dist-packages/torch/utils/data/dataloader.py", line 106, in <listcomp>
      samples = collate_fn([dataset[i] for i in batch_indices]) File "/home/HaziqBinRazali03/Trajectory Prediction/sgan-original/sgan/data/trajectories.py", line 204, in
      __getitem__
      df = self.df.iloc[b] File "/usr/local/lib/python3.5/dist-packages/pandas/core/indexing.py", line 1478, in __getitem__
      return self._getitem_axis(maybe_callable, axis=axis) File "/usr/local/lib/python3.5/dist-packages/pandas/core/indexing.py", line 2091, in _getitem_axis
      return self._get_list_axis(key, axis=axis) File "/usr/local/lib/python3.5/dist-packages/pandas/core/indexing.py", line 2070, in _get_list_axis
      return self.obj._take(key, axis=axis) File "/usr/local/lib/python3.5/dist-packages/pandas/core/generic.py", line 2789, in _take
      verify=True) File "/usr/local/lib/python3.5/dist-packages/pandas/core/internals.py", line 4537, in take
      new_labels = self.axes[axis].take(indexer) File "/usr/local/lib/python3.5/dist-packages/pandas/core/indexes/base.py", line 2195, in take
      return self._shallow_copy(taken) File "/usr/local/lib/python3.5/dist-packages/pandas/core/indexes/range.py", line 267, in _shallow_copy
      return self._int64index._shallow_copy(values, **kwargs) File "/usr/local/lib/python3.5/dist-packages/pandas/core/indexes/numeric.py", line 68, in _shallow_copy
      return self._shallow_copy_with_infer(values=values, **kwargs) File "/usr/local/lib/python3.5/dist-packages/pandas/core/indexes/base.py", line 538, in _shallow_copy_with_infer
      if not len(values) and 'dtype' not in kwargs: TypeError: object of type 'numpy.int64' has no len()


      The code snippet



         def __getitem__(self, index):

      print(index, index.numpy(), len(self.df))

      # get the row at index
      df = self.df.iloc[index] # doesnt work
      df = self.df.iloc[index.numpy()] # doesnt work
      df = self.df.iloc[640] # works

      # load the images and the label
      pedestrian_images =
      pedestrian_label = df["label"]
      for full_filename in df["full_filename"]:
      pedestrian_images.append(self.transform(Image.open(full_filename)))
      pedestrian_images = torch.stack(pedestrian_images, 0)

      return [pedestrian_images, pedestrian_label]


      Part of the pandas dataframe



           unique_id  label                                      full_filename
      0 112 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      1 606 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      2 327 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      3 385 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      4 736 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      5 634 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      6 534 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      7 61 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      8 40 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      9 124 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      10 165 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      11 97 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      12 559 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      13 98 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      14 190 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      15 360 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      16 478 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      17 737 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      18 633 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      19 362 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      20 95 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      21 375 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      22 301 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      23 729 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      24 240 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      25 312 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      26 537 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      27 786 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      28 585 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      29 443 0 [/home/HaziqBinRazali03/Trajectory Prediction/...









      share|improve this question














      I am facing a weird issue trying to index a row of my pandas dataframe. In the code below, the line self.df.iloc[index] raises the error below. I printed the values of index, index.numpy() and len(self.df) to verify that I am not exceeding the bounds. They give a value of tensor(640) 640 649. I tried indexing the dataframe with my own value which worked so I am not sure what the error is. I also posted this on the PyTorch forums since I am not sure where the error lies..




      • I am not exceeding the bounds

      • I can index using my own value (eg. 640)

      • I still cannot index it if I convert from tensor to numpy


      Error message



      Traceback (most recent call last):   File "train.py", line 532, in <module>
      main(args) File "train.py", line 203, in main
      for batch in train_loader: File "/usr/local/lib/python3.5/dist-packages/torch/utils/data/dataloader.py", line 336, in __next__
      return self._process_next_batch(batch) File "/usr/local/lib/python3.5/dist-packages/torch/utils/data/dataloader.py", line 357, in _process_next_batch
      raise batch.exc_type(batch.exc_msg) TypeError: Traceback (most recent call last): File "/usr/local/lib/python3.5/dist-packages/torch/utils/data/dataloader.py", line 106, in _worker_loop
      samples = collate_fn([dataset[i] for i in batch_indices]) File "/usr/local/lib/python3.5/dist-packages/torch/utils/data/dataloader.py", line 106, in <listcomp>
      samples = collate_fn([dataset[i] for i in batch_indices]) File "/home/HaziqBinRazali03/Trajectory Prediction/sgan-original/sgan/data/trajectories.py", line 204, in
      __getitem__
      df = self.df.iloc[b] File "/usr/local/lib/python3.5/dist-packages/pandas/core/indexing.py", line 1478, in __getitem__
      return self._getitem_axis(maybe_callable, axis=axis) File "/usr/local/lib/python3.5/dist-packages/pandas/core/indexing.py", line 2091, in _getitem_axis
      return self._get_list_axis(key, axis=axis) File "/usr/local/lib/python3.5/dist-packages/pandas/core/indexing.py", line 2070, in _get_list_axis
      return self.obj._take(key, axis=axis) File "/usr/local/lib/python3.5/dist-packages/pandas/core/generic.py", line 2789, in _take
      verify=True) File "/usr/local/lib/python3.5/dist-packages/pandas/core/internals.py", line 4537, in take
      new_labels = self.axes[axis].take(indexer) File "/usr/local/lib/python3.5/dist-packages/pandas/core/indexes/base.py", line 2195, in take
      return self._shallow_copy(taken) File "/usr/local/lib/python3.5/dist-packages/pandas/core/indexes/range.py", line 267, in _shallow_copy
      return self._int64index._shallow_copy(values, **kwargs) File "/usr/local/lib/python3.5/dist-packages/pandas/core/indexes/numeric.py", line 68, in _shallow_copy
      return self._shallow_copy_with_infer(values=values, **kwargs) File "/usr/local/lib/python3.5/dist-packages/pandas/core/indexes/base.py", line 538, in _shallow_copy_with_infer
      if not len(values) and 'dtype' not in kwargs: TypeError: object of type 'numpy.int64' has no len()


      The code snippet



         def __getitem__(self, index):

      print(index, index.numpy(), len(self.df))

      # get the row at index
      df = self.df.iloc[index] # doesnt work
      df = self.df.iloc[index.numpy()] # doesnt work
      df = self.df.iloc[640] # works

      # load the images and the label
      pedestrian_images =
      pedestrian_label = df["label"]
      for full_filename in df["full_filename"]:
      pedestrian_images.append(self.transform(Image.open(full_filename)))
      pedestrian_images = torch.stack(pedestrian_images, 0)

      return [pedestrian_images, pedestrian_label]


      Part of the pandas dataframe



           unique_id  label                                      full_filename
      0 112 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      1 606 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      2 327 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      3 385 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      4 736 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      5 634 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      6 534 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      7 61 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      8 40 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      9 124 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      10 165 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      11 97 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      12 559 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      13 98 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      14 190 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      15 360 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      16 478 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      17 737 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      18 633 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      19 362 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      20 95 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      21 375 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      22 301 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      23 729 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      24 240 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      25 312 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      26 537 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      27 786 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      28 585 0 [/home/HaziqBinRazali03/Trajectory Prediction/...
      29 443 0 [/home/HaziqBinRazali03/Trajectory Prediction/...






      python pandas






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      asked Nov 20 '18 at 1:33









      KongKong

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