Mixing
Increase Sampling rate on time-series data with Pandas
I have accelerometer data with variable sampling rate. I am trying to increase it a constant sampling rate 50hz through interpolation.The problem with the timestamps is, it doesn't have milliseconds.
How do i do it without losing the data i already have?
python pandas
asked Nov 19 '18 at 16:01
subhash
85111
add a comment |
I have accelerometer data with variable sampling rate. I am trying to increase it a constant sampling rate 50hz through interpolation.The problem with the timestamps is, it doesn't have milliseconds.
How do i do it without losing the data i already have?
python pandas
asked Nov 19 '18 at 16:01
subhash
85111
add a comment |
I have accelerometer data with variable sampling rate. I am trying to increase it a constant sampling rate 50hz through interpolation.The problem with the timestamps is, it doesn't have milliseconds.
How do i do it without losing the data i already have?
python pandas
asked Nov 19 '18 at 16:01
subhash
85111
I have accelerometer data with variable sampling rate. I am trying to increase it a constant sampling rate 50hz through interpolation.The problem with the timestamps is, it doesn't have milliseconds.
How do i do it without losing the data i already have?
python pandas
python pandas
asked Nov 19 '18 at 16:01
subhash
85111
asked Nov 19 '18 at 16:01
subhash
85111
asked Nov 19 '18 at 16:01
subhash
85111
asked Nov 19 '18 at 16:01
subhash
85111
asked Nov 19 '18 at 16:01
subhash
85111
85111
add a comment |
add a comment |
1 Answer
1
active
oldest
votes
You can first set the index as your datetime column using df.set_index('timestamp') and use df.resample(). The directive you want to pass into the resample function is L for milliseconds, but you can read more here. The resample function also lets you choose a number of interpolation modes.
answered Nov 19 '18 at 16:07
rvd
43117
I tried this df.resample('20ms', on='timestamp'). This only take first occurence's value and increases the sampling rate but all the rest of data for that particular second is lost. Its just populated as nan.
– subhash
Nov 19 '18 at 16:10
1
I see. That's tricky because topandas, it just sees a bunch of values with the same timestamp and doesn't know what to do with it. Moreover, it doesn't even seem that there are always the same number of repeated timestamps. It seems you may have roll something manually; basically go second by second, assume all values for a given second are spaced out evenly for a second, and interpolate using the mean of neighbors or something.
– rvd
Nov 19 '18 at 16:14
Another possible way is to go through second by second and change the timestamps so that they are spaced evenly by for how many times a second value repeats, and then use resample to fill everything else. This waypandaswill still do most of the work.
– rvd
Nov 19 '18 at 16:15
add a comment |
Your Answer
StackExchange.ifUsing("editor", function () {
StackExchange.using("externalEditor", function () {
StackExchange.using("snippets", function () {
StackExchange.snippets.init();
});
});
}, "code-snippets");
StackExchange.ready(function() {
var channelOptions = {
tags: "".split(" "),
id: "1"
};
initTagRenderer("".split(" "), "".split(" "), channelOptions);
StackExchange.using("externalEditor", function() {
// Have to fire editor after snippets, if snippets enabled
if (StackExchange.settings.snippets.snippetsEnabled) {
StackExchange.using("snippets", function() {
createEditor();
});
}
else {
createEditor();
}
});
function createEditor() {
StackExchange.prepareEditor({
heartbeatType: 'answer',
autoActivateHeartbeat: false,
convertImagesToLinks: true,
noModals: true,
showLowRepImageUploadWarning: true,
reputationToPostImages: 10,
bindNavPrevention: true,
postfix: "",
imageUploader: {
brandingHtml: "Powered by u003ca class="icon-imgur-white" href="https://imgur.com/"u003eu003c/au003e",
contentPolicyHtml: "User contributions licensed under u003ca href="https://creativecommons.org/licenses/by-sa/3.0/"u003ecc by-sa 3.0 with attribution requiredu003c/au003e u003ca href="https://stackoverflow.com/legal/content-policy"u003e(content policy)u003c/au003e",
allowUrls: true
},
onDemand: true,
discardSelector: ".discard-answer"
,immediatelyShowMarkdownHelp:true
});
}
});
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
StackExchange.ready(
function () {
StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f53378457%2fincrease-sampling-rate-on-time-series-data-with-pandas%23new-answer', 'question_page');
}
);
Post as a guest
Required, but never shown
1 Answer
1
active
oldest
votes
1 Answer
1
active
oldest
votes
active
oldest
votes
active
oldest
votes
You can first set the index as your datetime column using df.set_index('timestamp') and use df.resample(). The directive you want to pass into the resample function is L for milliseconds, but you can read more here. The resample function also lets you choose a number of interpolation modes.
answered Nov 19 '18 at 16:07
rvd
43117
I tried this df.resample('20ms', on='timestamp'). This only take first occurence's value and increases the sampling rate but all the rest of data for that particular second is lost. Its just populated as nan.
– subhash
Nov 19 '18 at 16:10
1
I see. That's tricky because topandas, it just sees a bunch of values with the same timestamp and doesn't know what to do with it. Moreover, it doesn't even seem that there are always the same number of repeated timestamps. It seems you may have roll something manually; basically go second by second, assume all values for a given second are spaced out evenly for a second, and interpolate using the mean of neighbors or something.
– rvd
Nov 19 '18 at 16:14
Another possible way is to go through second by second and change the timestamps so that they are spaced evenly by for how many times a second value repeats, and then use resample to fill everything else. This waypandaswill still do most of the work.
– rvd
Nov 19 '18 at 16:15
add a comment |
You can first set the index as your datetime column using df.set_index('timestamp') and use df.resample(). The directive you want to pass into the resample function is L for milliseconds, but you can read more here. The resample function also lets you choose a number of interpolation modes.
answered Nov 19 '18 at 16:07
rvd
43117
I tried this df.resample('20ms', on='timestamp'). This only take first occurence's value and increases the sampling rate but all the rest of data for that particular second is lost. Its just populated as nan.
– subhash
Nov 19 '18 at 16:10
1
I see. That's tricky because topandas, it just sees a bunch of values with the same timestamp and doesn't know what to do with it. Moreover, it doesn't even seem that there are always the same number of repeated timestamps. It seems you may have roll something manually; basically go second by second, assume all values for a given second are spaced out evenly for a second, and interpolate using the mean of neighbors or something.
– rvd
Nov 19 '18 at 16:14
Another possible way is to go through second by second and change the timestamps so that they are spaced evenly by for how many times a second value repeats, and then use resample to fill everything else. This waypandaswill still do most of the work.
– rvd
Nov 19 '18 at 16:15
add a comment |
You can first set the index as your datetime column using df.set_index('timestamp') and use df.resample(). The directive you want to pass into the resample function is L for milliseconds, but you can read more here. The resample function also lets you choose a number of interpolation modes.
answered Nov 19 '18 at 16:07
rvd
43117
You can first set the index as your datetime column using df.set_index('timestamp') and use df.resample(). The directive you want to pass into the resample function is L for milliseconds, but you can read more here. The resample function also lets you choose a number of interpolation modes.
answered Nov 19 '18 at 16:07
rvd
43117
answered Nov 19 '18 at 16:07
rvd
43117
answered Nov 19 '18 at 16:07
rvd
43117
answered Nov 19 '18 at 16:07
rvd
43117
43117
I tried this df.resample('20ms', on='timestamp'). This only take first occurence's value and increases the sampling rate but all the rest of data for that particular second is lost. Its just populated as nan.
– subhash
Nov 19 '18 at 16:10
1
I see. That's tricky because topandas, it just sees a bunch of values with the same timestamp and doesn't know what to do with it. Moreover, it doesn't even seem that there are always the same number of repeated timestamps. It seems you may have roll something manually; basically go second by second, assume all values for a given second are spaced out evenly for a second, and interpolate using the mean of neighbors or something.
– rvd
Nov 19 '18 at 16:14
Another possible way is to go through second by second and change the timestamps so that they are spaced evenly by for how many times a second value repeats, and then use resample to fill everything else. This waypandaswill still do most of the work.
– rvd
Nov 19 '18 at 16:15
add a comment |
I tried this df.resample('20ms', on='timestamp'). This only take first occurence's value and increases the sampling rate but all the rest of data for that particular second is lost. Its just populated as nan.
– subhash
Nov 19 '18 at 16:10
1
I see. That's tricky because topandas, it just sees a bunch of values with the same timestamp and doesn't know what to do with it. Moreover, it doesn't even seem that there are always the same number of repeated timestamps. It seems you may have roll something manually; basically go second by second, assume all values for a given second are spaced out evenly for a second, and interpolate using the mean of neighbors or something.
– rvd
Nov 19 '18 at 16:14
Another possible way is to go through second by second and change the timestamps so that they are spaced evenly by for how many times a second value repeats, and then use resample to fill everything else. This waypandaswill still do most of the work.
– rvd
Nov 19 '18 at 16:15
I tried this df.resample('20ms', on='timestamp'). This only take first occurence's value and increases the sampling rate but all the rest of data for that particular second is lost. Its just populated as nan.
– subhash
Nov 19 '18 at 16:10
I tried this df.resample('20ms', on='timestamp'). This only take first occurence's value and increases the sampling rate but all the rest of data for that particular second is lost. Its just populated as nan.
– subhash
Nov 19 '18 at 16:10
1
1
I see. That's tricky because to
pandas, it just sees a bunch of values with the same timestamp and doesn't know what to do with it. Moreover, it doesn't even seem that there are always the same number of repeated timestamps. It seems you may have roll something manually; basically go second by second, assume all values for a given second are spaced out evenly for a second, and interpolate using the mean of neighbors or something.– rvd
Nov 19 '18 at 16:14
I see. That's tricky because to
pandas, it just sees a bunch of values with the same timestamp and doesn't know what to do with it. Moreover, it doesn't even seem that there are always the same number of repeated timestamps. It seems you may have roll something manually; basically go second by second, assume all values for a given second are spaced out evenly for a second, and interpolate using the mean of neighbors or something.– rvd
Nov 19 '18 at 16:14
Another possible way is to go through second by second and change the timestamps so that they are spaced evenly by for how many times a second value repeats, and then use resample to fill everything else. This way
pandas will still do most of the work.– rvd
Nov 19 '18 at 16:15
Another possible way is to go through second by second and change the timestamps so that they are spaced evenly by for how many times a second value repeats, and then use resample to fill everything else. This way
pandas will still do most of the work.– rvd
Nov 19 '18 at 16:15
add a comment |
Thanks for contributing an answer to Stack Overflow!
- Please be sure to answer the question. Provide details and share your research!
But avoid …
- Asking for help, clarification, or responding to other answers.
- Making statements based on opinion; back them up with references or personal experience.
To learn more, see our tips on writing great answers.
Some of your past answers have not been well-received, and you're in danger of being blocked from answering.
Please pay close attention to the following guidance:
- Please be sure to answer the question. Provide details and share your research!
But avoid …
- Asking for help, clarification, or responding to other answers.
- Making statements based on opinion; back them up with references or personal experience.
To learn more, see our tips on writing great answers.
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
StackExchange.ready(
function () {
StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f53378457%2fincrease-sampling-rate-on-time-series-data-with-pandas%23new-answer', 'question_page');
}
);
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
