Xgboost throws an error when trying to import
I have a project that is using xgboost. We now transfer the project to containers.
But after installing it using pip, it throws the following error:
Traceback (most recent call last):
File "restart_db.py", line 5, in <module>
from autoai.core.providers import GlobalEnrichmentProvider
File "/volumes/code/autoai/core/providers/__init__.py", line 1, in <module>
from .files_providers import CsvProvider, TsvProvider, ExcelProvider, FileProvider
File "/volumes/code/autoai/core/providers/files_providers.py", line 10, in <module>
from .base import BaseProvider, BaseInMemoryProvider
File "/volumes/code/autoai/core/providers/base.py", line 1, in <module>
from autoai.models.dataset_connection import JoinTypes
File "/volumes/code/autoai/models/__init__.py", line 5, in <module>
from .classifier import Classifier
File "/volumes/code/autoai/models/classifier.py", line 8, in <module>
from eli5 import explain_prediction
File "/volumes/dependencies/lib/python3.6/site-packages/eli5/__init__.py", line 53, in <module>
from .xgboost import (
File "/volumes/dependencies/lib/python3.6/site-packages/eli5/xgboost.py", line 9, in <module>
from xgboost import ( # type: ignore
File "/volumes/dependencies/lib/python3.6/site-packages/xgboost/__init__.py", line 11, in <module>
from .core import DMatrix, Booster
File "/volumes/dependencies/lib/python3.6/site-packages/xgboost/core.py", line 150, in <module>
_LIB = _load_lib()
File "/volumes/dependencies/lib/python3.6/site-packages/xgboost/core.py", line 141, in _load_lib
'Error message(s): {}n'.format(os_error_list))
xgboost.core.XGBoostError: XGBoost Library (libxgboost.so) could not be loaded.
Likely causes:
* OpenMP runtime is not installed (vcomp140.dll or libgomp-1.dll for Windows, libgomp.so for UNIX-like OSes)
* You are running 32-bit Python on a 64-bit OS
Error message(s): ['libgomp.so.1: cannot open shared object file: No such file or directory']
I checked that both my python and my ubuntu are 64-bit, and ran:
apt-get update && apt-get install -y libaio1
To make sure that package is there (I read it somewhere that this might be the problem) - but it still throws the same error.
I've been stuck on this for a while now and will appreciate any help.
python openmp xgboost libgomp
add a comment |
I have a project that is using xgboost. We now transfer the project to containers.
But after installing it using pip, it throws the following error:
Traceback (most recent call last):
File "restart_db.py", line 5, in <module>
from autoai.core.providers import GlobalEnrichmentProvider
File "/volumes/code/autoai/core/providers/__init__.py", line 1, in <module>
from .files_providers import CsvProvider, TsvProvider, ExcelProvider, FileProvider
File "/volumes/code/autoai/core/providers/files_providers.py", line 10, in <module>
from .base import BaseProvider, BaseInMemoryProvider
File "/volumes/code/autoai/core/providers/base.py", line 1, in <module>
from autoai.models.dataset_connection import JoinTypes
File "/volumes/code/autoai/models/__init__.py", line 5, in <module>
from .classifier import Classifier
File "/volumes/code/autoai/models/classifier.py", line 8, in <module>
from eli5 import explain_prediction
File "/volumes/dependencies/lib/python3.6/site-packages/eli5/__init__.py", line 53, in <module>
from .xgboost import (
File "/volumes/dependencies/lib/python3.6/site-packages/eli5/xgboost.py", line 9, in <module>
from xgboost import ( # type: ignore
File "/volumes/dependencies/lib/python3.6/site-packages/xgboost/__init__.py", line 11, in <module>
from .core import DMatrix, Booster
File "/volumes/dependencies/lib/python3.6/site-packages/xgboost/core.py", line 150, in <module>
_LIB = _load_lib()
File "/volumes/dependencies/lib/python3.6/site-packages/xgboost/core.py", line 141, in _load_lib
'Error message(s): {}n'.format(os_error_list))
xgboost.core.XGBoostError: XGBoost Library (libxgboost.so) could not be loaded.
Likely causes:
* OpenMP runtime is not installed (vcomp140.dll or libgomp-1.dll for Windows, libgomp.so for UNIX-like OSes)
* You are running 32-bit Python on a 64-bit OS
Error message(s): ['libgomp.so.1: cannot open shared object file: No such file or directory']
I checked that both my python and my ubuntu are 64-bit, and ran:
apt-get update && apt-get install -y libaio1
To make sure that package is there (I read it somewhere that this might be the problem) - but it still throws the same error.
I've been stuck on this for a while now and will appreciate any help.
python openmp xgboost libgomp
add a comment |
I have a project that is using xgboost. We now transfer the project to containers.
But after installing it using pip, it throws the following error:
Traceback (most recent call last):
File "restart_db.py", line 5, in <module>
from autoai.core.providers import GlobalEnrichmentProvider
File "/volumes/code/autoai/core/providers/__init__.py", line 1, in <module>
from .files_providers import CsvProvider, TsvProvider, ExcelProvider, FileProvider
File "/volumes/code/autoai/core/providers/files_providers.py", line 10, in <module>
from .base import BaseProvider, BaseInMemoryProvider
File "/volumes/code/autoai/core/providers/base.py", line 1, in <module>
from autoai.models.dataset_connection import JoinTypes
File "/volumes/code/autoai/models/__init__.py", line 5, in <module>
from .classifier import Classifier
File "/volumes/code/autoai/models/classifier.py", line 8, in <module>
from eli5 import explain_prediction
File "/volumes/dependencies/lib/python3.6/site-packages/eli5/__init__.py", line 53, in <module>
from .xgboost import (
File "/volumes/dependencies/lib/python3.6/site-packages/eli5/xgboost.py", line 9, in <module>
from xgboost import ( # type: ignore
File "/volumes/dependencies/lib/python3.6/site-packages/xgboost/__init__.py", line 11, in <module>
from .core import DMatrix, Booster
File "/volumes/dependencies/lib/python3.6/site-packages/xgboost/core.py", line 150, in <module>
_LIB = _load_lib()
File "/volumes/dependencies/lib/python3.6/site-packages/xgboost/core.py", line 141, in _load_lib
'Error message(s): {}n'.format(os_error_list))
xgboost.core.XGBoostError: XGBoost Library (libxgboost.so) could not be loaded.
Likely causes:
* OpenMP runtime is not installed (vcomp140.dll or libgomp-1.dll for Windows, libgomp.so for UNIX-like OSes)
* You are running 32-bit Python on a 64-bit OS
Error message(s): ['libgomp.so.1: cannot open shared object file: No such file or directory']
I checked that both my python and my ubuntu are 64-bit, and ran:
apt-get update && apt-get install -y libaio1
To make sure that package is there (I read it somewhere that this might be the problem) - but it still throws the same error.
I've been stuck on this for a while now and will appreciate any help.
python openmp xgboost libgomp
I have a project that is using xgboost. We now transfer the project to containers.
But after installing it using pip, it throws the following error:
Traceback (most recent call last):
File "restart_db.py", line 5, in <module>
from autoai.core.providers import GlobalEnrichmentProvider
File "/volumes/code/autoai/core/providers/__init__.py", line 1, in <module>
from .files_providers import CsvProvider, TsvProvider, ExcelProvider, FileProvider
File "/volumes/code/autoai/core/providers/files_providers.py", line 10, in <module>
from .base import BaseProvider, BaseInMemoryProvider
File "/volumes/code/autoai/core/providers/base.py", line 1, in <module>
from autoai.models.dataset_connection import JoinTypes
File "/volumes/code/autoai/models/__init__.py", line 5, in <module>
from .classifier import Classifier
File "/volumes/code/autoai/models/classifier.py", line 8, in <module>
from eli5 import explain_prediction
File "/volumes/dependencies/lib/python3.6/site-packages/eli5/__init__.py", line 53, in <module>
from .xgboost import (
File "/volumes/dependencies/lib/python3.6/site-packages/eli5/xgboost.py", line 9, in <module>
from xgboost import ( # type: ignore
File "/volumes/dependencies/lib/python3.6/site-packages/xgboost/__init__.py", line 11, in <module>
from .core import DMatrix, Booster
File "/volumes/dependencies/lib/python3.6/site-packages/xgboost/core.py", line 150, in <module>
_LIB = _load_lib()
File "/volumes/dependencies/lib/python3.6/site-packages/xgboost/core.py", line 141, in _load_lib
'Error message(s): {}n'.format(os_error_list))
xgboost.core.XGBoostError: XGBoost Library (libxgboost.so) could not be loaded.
Likely causes:
* OpenMP runtime is not installed (vcomp140.dll or libgomp-1.dll for Windows, libgomp.so for UNIX-like OSes)
* You are running 32-bit Python on a 64-bit OS
Error message(s): ['libgomp.so.1: cannot open shared object file: No such file or directory']
I checked that both my python and my ubuntu are 64-bit, and ran:
apt-get update && apt-get install -y libaio1
To make sure that package is there (I read it somewhere that this might be the problem) - but it still throws the same error.
I've been stuck on this for a while now and will appreciate any help.
python openmp xgboost libgomp
python openmp xgboost libgomp
asked Nov 21 '18 at 8:12
NotSoShabbyNotSoShabby
293215
293215
add a comment |
add a comment |
0
active
oldest
votes
Your Answer
StackExchange.ifUsing("editor", function () {
StackExchange.using("externalEditor", function () {
StackExchange.using("snippets", function () {
StackExchange.snippets.init();
});
});
}, "code-snippets");
StackExchange.ready(function() {
var channelOptions = {
tags: "".split(" "),
id: "1"
};
initTagRenderer("".split(" "), "".split(" "), channelOptions);
StackExchange.using("externalEditor", function() {
// Have to fire editor after snippets, if snippets enabled
if (StackExchange.settings.snippets.snippetsEnabled) {
StackExchange.using("snippets", function() {
createEditor();
});
}
else {
createEditor();
}
});
function createEditor() {
StackExchange.prepareEditor({
heartbeatType: 'answer',
autoActivateHeartbeat: false,
convertImagesToLinks: true,
noModals: true,
showLowRepImageUploadWarning: true,
reputationToPostImages: 10,
bindNavPrevention: true,
postfix: "",
imageUploader: {
brandingHtml: "Powered by u003ca class="icon-imgur-white" href="https://imgur.com/"u003eu003c/au003e",
contentPolicyHtml: "User contributions licensed under u003ca href="https://creativecommons.org/licenses/by-sa/3.0/"u003ecc by-sa 3.0 with attribution requiredu003c/au003e u003ca href="https://stackoverflow.com/legal/content-policy"u003e(content policy)u003c/au003e",
allowUrls: true
},
onDemand: true,
discardSelector: ".discard-answer"
,immediatelyShowMarkdownHelp:true
});
}
});
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
StackExchange.ready(
function () {
StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f53407701%2fxgboost-throws-an-error-when-trying-to-import%23new-answer', 'question_page');
}
);
Post as a guest
Required, but never shown
0
active
oldest
votes
0
active
oldest
votes
active
oldest
votes
active
oldest
votes
Thanks for contributing an answer to Stack Overflow!
- Please be sure to answer the question. Provide details and share your research!
But avoid …
- Asking for help, clarification, or responding to other answers.
- Making statements based on opinion; back them up with references or personal experience.
To learn more, see our tips on writing great answers.
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
StackExchange.ready(
function () {
StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f53407701%2fxgboost-throws-an-error-when-trying-to-import%23new-answer', 'question_page');
}
);
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown