Python3 PyPDF2 - how to treat file handlers as BytesIO objects?












2















Have a nice, tested bit of python PyPDF2 code a .py designed to operate on 'real' OS files. Having debugged it all, I am now trying to incorporate it into a plPython function, replacing files with io.BytesIO() - or whatever mechanism would be the best candidate for seamless drop-in...



The file read/writes will now be to PostgreSQL bytea cols. Documents 'in' have been written with PG copy functions - byte counts match disk sizes; so far so good.



Original code expected files:



# infile = "myInputPdf.pdf"
# outfile = "myOutputPdf.pdf"

# inputStream = open(infile, "rb") # designed to open OS-based file
# --- Instead: 'document_in' loaded from PG bytea col:
inputStream = io.BytesIO(document_in)
# ---
pdf_reader = PdfFileReader(inputStream, strict=False)
# (lots of code in here, seems? to be working)
outputStream = io.BytesIO() # trying it the python3 way!
pdf_writer.write(outputStream)


(I've assumed the objects should be treated as byte objects)



Finally:



plan3 = plpy.prepare("UPDATE documents SET document_out=$2 WHERE name=$1", ["varchar"]["varchar"])
ERROR: TypeError: list indices must be integers, not str


(PostgreSQL 11.1, if it matters)



Have done similar things in the past using mkstemp techniques; trying now to grow up into the bytes world!










share|improve this question





























    2















    Have a nice, tested bit of python PyPDF2 code a .py designed to operate on 'real' OS files. Having debugged it all, I am now trying to incorporate it into a plPython function, replacing files with io.BytesIO() - or whatever mechanism would be the best candidate for seamless drop-in...



    The file read/writes will now be to PostgreSQL bytea cols. Documents 'in' have been written with PG copy functions - byte counts match disk sizes; so far so good.



    Original code expected files:



    # infile = "myInputPdf.pdf"
    # outfile = "myOutputPdf.pdf"

    # inputStream = open(infile, "rb") # designed to open OS-based file
    # --- Instead: 'document_in' loaded from PG bytea col:
    inputStream = io.BytesIO(document_in)
    # ---
    pdf_reader = PdfFileReader(inputStream, strict=False)
    # (lots of code in here, seems? to be working)
    outputStream = io.BytesIO() # trying it the python3 way!
    pdf_writer.write(outputStream)


    (I've assumed the objects should be treated as byte objects)



    Finally:



    plan3 = plpy.prepare("UPDATE documents SET document_out=$2 WHERE name=$1", ["varchar"]["varchar"])
    ERROR: TypeError: list indices must be integers, not str


    (PostgreSQL 11.1, if it matters)



    Have done similar things in the past using mkstemp techniques; trying now to grow up into the bytes world!










    share|improve this question



























      2












      2








      2








      Have a nice, tested bit of python PyPDF2 code a .py designed to operate on 'real' OS files. Having debugged it all, I am now trying to incorporate it into a plPython function, replacing files with io.BytesIO() - or whatever mechanism would be the best candidate for seamless drop-in...



      The file read/writes will now be to PostgreSQL bytea cols. Documents 'in' have been written with PG copy functions - byte counts match disk sizes; so far so good.



      Original code expected files:



      # infile = "myInputPdf.pdf"
      # outfile = "myOutputPdf.pdf"

      # inputStream = open(infile, "rb") # designed to open OS-based file
      # --- Instead: 'document_in' loaded from PG bytea col:
      inputStream = io.BytesIO(document_in)
      # ---
      pdf_reader = PdfFileReader(inputStream, strict=False)
      # (lots of code in here, seems? to be working)
      outputStream = io.BytesIO() # trying it the python3 way!
      pdf_writer.write(outputStream)


      (I've assumed the objects should be treated as byte objects)



      Finally:



      plan3 = plpy.prepare("UPDATE documents SET document_out=$2 WHERE name=$1", ["varchar"]["varchar"])
      ERROR: TypeError: list indices must be integers, not str


      (PostgreSQL 11.1, if it matters)



      Have done similar things in the past using mkstemp techniques; trying now to grow up into the bytes world!










      share|improve this question
















      Have a nice, tested bit of python PyPDF2 code a .py designed to operate on 'real' OS files. Having debugged it all, I am now trying to incorporate it into a plPython function, replacing files with io.BytesIO() - or whatever mechanism would be the best candidate for seamless drop-in...



      The file read/writes will now be to PostgreSQL bytea cols. Documents 'in' have been written with PG copy functions - byte counts match disk sizes; so far so good.



      Original code expected files:



      # infile = "myInputPdf.pdf"
      # outfile = "myOutputPdf.pdf"

      # inputStream = open(infile, "rb") # designed to open OS-based file
      # --- Instead: 'document_in' loaded from PG bytea col:
      inputStream = io.BytesIO(document_in)
      # ---
      pdf_reader = PdfFileReader(inputStream, strict=False)
      # (lots of code in here, seems? to be working)
      outputStream = io.BytesIO() # trying it the python3 way!
      pdf_writer.write(outputStream)


      (I've assumed the objects should be treated as byte objects)



      Finally:



      plan3 = plpy.prepare("UPDATE documents SET document_out=$2 WHERE name=$1", ["varchar"]["varchar"])
      ERROR: TypeError: list indices must be integers, not str


      (PostgreSQL 11.1, if it matters)



      Have done similar things in the past using mkstemp techniques; trying now to grow up into the bytes world!







      python python-3.x postgresql plpython






      share|improve this question















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      edited Jan 7 at 17:26









      klin

      60.7k65787




      60.7k65787










      asked Jan 2 at 21:57









      DrLouDrLou

      374319




      374319
























          1 Answer
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          The second argument in plpy.prepare() is a list. The column type is bytea, not varchar. And you should use bytes (not a file object) to update the column:



          plan3 = plpy.prepare("UPDATE documents SET document_out=$2 WHERE name=$1", ["varchar", "bytea"])
          outputStream.seek(0)
          bytes_out = outputStream.read()
          plpy.execute(plan3, ['some name', bytes_out])





          share|improve this answer
























          • Really perfect, klin - tks for your response. Duh...! of course; gotta reset the stream's pointer.

            – DrLou
            Jan 3 at 13:33












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          1 Answer
          1






          active

          oldest

          votes








          1 Answer
          1






          active

          oldest

          votes









          active

          oldest

          votes






          active

          oldest

          votes









          1














          The second argument in plpy.prepare() is a list. The column type is bytea, not varchar. And you should use bytes (not a file object) to update the column:



          plan3 = plpy.prepare("UPDATE documents SET document_out=$2 WHERE name=$1", ["varchar", "bytea"])
          outputStream.seek(0)
          bytes_out = outputStream.read()
          plpy.execute(plan3, ['some name', bytes_out])





          share|improve this answer
























          • Really perfect, klin - tks for your response. Duh...! of course; gotta reset the stream's pointer.

            – DrLou
            Jan 3 at 13:33
















          1














          The second argument in plpy.prepare() is a list. The column type is bytea, not varchar. And you should use bytes (not a file object) to update the column:



          plan3 = plpy.prepare("UPDATE documents SET document_out=$2 WHERE name=$1", ["varchar", "bytea"])
          outputStream.seek(0)
          bytes_out = outputStream.read()
          plpy.execute(plan3, ['some name', bytes_out])





          share|improve this answer
























          • Really perfect, klin - tks for your response. Duh...! of course; gotta reset the stream's pointer.

            – DrLou
            Jan 3 at 13:33














          1












          1








          1







          The second argument in plpy.prepare() is a list. The column type is bytea, not varchar. And you should use bytes (not a file object) to update the column:



          plan3 = plpy.prepare("UPDATE documents SET document_out=$2 WHERE name=$1", ["varchar", "bytea"])
          outputStream.seek(0)
          bytes_out = outputStream.read()
          plpy.execute(plan3, ['some name', bytes_out])





          share|improve this answer













          The second argument in plpy.prepare() is a list. The column type is bytea, not varchar. And you should use bytes (not a file object) to update the column:



          plan3 = plpy.prepare("UPDATE documents SET document_out=$2 WHERE name=$1", ["varchar", "bytea"])
          outputStream.seek(0)
          bytes_out = outputStream.read()
          plpy.execute(plan3, ['some name', bytes_out])






          share|improve this answer












          share|improve this answer



          share|improve this answer










          answered Jan 2 at 23:20









          klinklin

          60.7k65787




          60.7k65787













          • Really perfect, klin - tks for your response. Duh...! of course; gotta reset the stream's pointer.

            – DrLou
            Jan 3 at 13:33



















          • Really perfect, klin - tks for your response. Duh...! of course; gotta reset the stream's pointer.

            – DrLou
            Jan 3 at 13:33

















          Really perfect, klin - tks for your response. Duh...! of course; gotta reset the stream's pointer.

          – DrLou
          Jan 3 at 13:33





          Really perfect, klin - tks for your response. Duh...! of course; gotta reset the stream's pointer.

          – DrLou
          Jan 3 at 13:33




















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