Mixing
Information shows in browser, not “R Help” pane, when using StatET
I am using Eclipse 2018-09 and StatET 3.6.1. I have two R environments: one for R 3.3.2, another for R 3.5.1. When I execute a command like ?lm to call up a help page in v3.3.2, the page appears in the StatET "R Help" pane, as I want it to. But when I execute the same command to call up a help page in v3.5.1, the console tells me "starting httpd help server," and the help page loads in my browser. How can I get help to load in the "R Help" pane when using v3.5.1?
The problem arises whether or not I run Eclipse as an administrator, and whether or not I "Auto Run" R 3.5.1 upon booting. And as far as I can tell, the configurations for the two versions of R are nearly identical:
- Both are running Windows 10 and JRE 1.8.0_121.
- Both with version 2.1 of the
rjpackage. - For both, I've checked every box in "Run Configurations > R Console > R Console > Eclipse Integration," including "Enable R Help for StatET."
- For both,
options("help_type") == 'html'.
Inspection of the different log files that I get when using Auto Run with the two versions of R suggests that there is some sort of StatET config problem that has to do with Derby. These messages appear only when I boot R 3.5.1:
!ENTRY de.walware.statet.r.core 4 -1 2018-11-16 02:50:29.092
!MESSAGE An error occurred when initializing DB for model.
!STACK 1
org.eclipse.core.runtime.CoreException: An error occurred when loading embedded DB (Derby + DBCP)
DB ConnectionURL=[path redacted]eclipse-workspace.metadata.pluginsde.walware.statet.r.coredb
[...]
Caused by: java.sql.SQLException: Another instance of Derby may have already booted the database C:[path redacted]eclipse-workspace.metadata.pluginsde.walware.statet.r.coredb.
[...]
Caused by: ERROR XSDB6: Another instance of Derby may have already booted the database C:[path redacted]eclipse-workspace.metadata.pluginsde.walware.statet.r.coredb.
But I don't know what to make of this problem or how to fix it.
r eclipse derby statet
asked Nov 7 '18 at 2:20
user697473user697473
615623
add a comment |
I am using Eclipse 2018-09 and StatET 3.6.1. I have two R environments: one for R 3.3.2, another for R 3.5.1. When I execute a command like ?lm to call up a help page in v3.3.2, the page appears in the StatET "R Help" pane, as I want it to. But when I execute the same command to call up a help page in v3.5.1, the console tells me "starting httpd help server," and the help page loads in my browser. How can I get help to load in the "R Help" pane when using v3.5.1?
The problem arises whether or not I run Eclipse as an administrator, and whether or not I "Auto Run" R 3.5.1 upon booting. And as far as I can tell, the configurations for the two versions of R are nearly identical:
- Both are running Windows 10 and JRE 1.8.0_121.
- Both with version 2.1 of the
rjpackage. - For both, I've checked every box in "Run Configurations > R Console > R Console > Eclipse Integration," including "Enable R Help for StatET."
- For both,
options("help_type") == 'html'.
Inspection of the different log files that I get when using Auto Run with the two versions of R suggests that there is some sort of StatET config problem that has to do with Derby. These messages appear only when I boot R 3.5.1:
!ENTRY de.walware.statet.r.core 4 -1 2018-11-16 02:50:29.092
!MESSAGE An error occurred when initializing DB for model.
!STACK 1
org.eclipse.core.runtime.CoreException: An error occurred when loading embedded DB (Derby + DBCP)
DB ConnectionURL=[path redacted]eclipse-workspace.metadata.pluginsde.walware.statet.r.coredb
[...]
Caused by: java.sql.SQLException: Another instance of Derby may have already booted the database C:[path redacted]eclipse-workspace.metadata.pluginsde.walware.statet.r.coredb.
[...]
Caused by: ERROR XSDB6: Another instance of Derby may have already booted the database C:[path redacted]eclipse-workspace.metadata.pluginsde.walware.statet.r.coredb.
But I don't know what to make of this problem or how to fix it.
r eclipse derby statet
asked Nov 7 '18 at 2:20
user697473user697473
615623
add a comment |
I am using Eclipse 2018-09 and StatET 3.6.1. I have two R environments: one for R 3.3.2, another for R 3.5.1. When I execute a command like ?lm to call up a help page in v3.3.2, the page appears in the StatET "R Help" pane, as I want it to. But when I execute the same command to call up a help page in v3.5.1, the console tells me "starting httpd help server," and the help page loads in my browser. How can I get help to load in the "R Help" pane when using v3.5.1?
The problem arises whether or not I run Eclipse as an administrator, and whether or not I "Auto Run" R 3.5.1 upon booting. And as far as I can tell, the configurations for the two versions of R are nearly identical:
- Both are running Windows 10 and JRE 1.8.0_121.
- Both with version 2.1 of the
rjpackage. - For both, I've checked every box in "Run Configurations > R Console > R Console > Eclipse Integration," including "Enable R Help for StatET."
- For both,
options("help_type") == 'html'.
Inspection of the different log files that I get when using Auto Run with the two versions of R suggests that there is some sort of StatET config problem that has to do with Derby. These messages appear only when I boot R 3.5.1:
!ENTRY de.walware.statet.r.core 4 -1 2018-11-16 02:50:29.092
!MESSAGE An error occurred when initializing DB for model.
!STACK 1
org.eclipse.core.runtime.CoreException: An error occurred when loading embedded DB (Derby + DBCP)
DB ConnectionURL=[path redacted]eclipse-workspace.metadata.pluginsde.walware.statet.r.coredb
[...]
Caused by: java.sql.SQLException: Another instance of Derby may have already booted the database C:[path redacted]eclipse-workspace.metadata.pluginsde.walware.statet.r.coredb.
[...]
Caused by: ERROR XSDB6: Another instance of Derby may have already booted the database C:[path redacted]eclipse-workspace.metadata.pluginsde.walware.statet.r.coredb.
But I don't know what to make of this problem or how to fix it.
r eclipse derby statet
asked Nov 7 '18 at 2:20
user697473user697473
615623
I am using Eclipse 2018-09 and StatET 3.6.1. I have two R environments: one for R 3.3.2, another for R 3.5.1. When I execute a command like ?lm to call up a help page in v3.3.2, the page appears in the StatET "R Help" pane, as I want it to. But when I execute the same command to call up a help page in v3.5.1, the console tells me "starting httpd help server," and the help page loads in my browser. How can I get help to load in the "R Help" pane when using v3.5.1?
The problem arises whether or not I run Eclipse as an administrator, and whether or not I "Auto Run" R 3.5.1 upon booting. And as far as I can tell, the configurations for the two versions of R are nearly identical:
- Both are running Windows 10 and JRE 1.8.0_121.
- Both with version 2.1 of the
rjpackage. - For both, I've checked every box in "Run Configurations > R Console > R Console > Eclipse Integration," including "Enable R Help for StatET."
- For both,
options("help_type") == 'html'.
Inspection of the different log files that I get when using Auto Run with the two versions of R suggests that there is some sort of StatET config problem that has to do with Derby. These messages appear only when I boot R 3.5.1:
!ENTRY de.walware.statet.r.core 4 -1 2018-11-16 02:50:29.092
!MESSAGE An error occurred when initializing DB for model.
!STACK 1
org.eclipse.core.runtime.CoreException: An error occurred when loading embedded DB (Derby + DBCP)
DB ConnectionURL=[path redacted]eclipse-workspace.metadata.pluginsde.walware.statet.r.coredb
[...]
Caused by: java.sql.SQLException: Another instance of Derby may have already booted the database C:[path redacted]eclipse-workspace.metadata.pluginsde.walware.statet.r.coredb.
[...]
Caused by: ERROR XSDB6: Another instance of Derby may have already booted the database C:[path redacted]eclipse-workspace.metadata.pluginsde.walware.statet.r.coredb.
But I don't know what to make of this problem or how to fix it.
r eclipse derby statet
r eclipse derby statet
asked Nov 7 '18 at 2:20
user697473user697473
615623
asked Nov 7 '18 at 2:20
user697473user697473
615623
edited Nov 16 '18 at 16:12
user697473
asked Nov 7 '18 at 2:20
user697473user697473
615623
asked Nov 7 '18 at 2:20
user697473user697473
615623
asked Nov 7 '18 at 2:20
user697473user697473
615623
615623
add a comment |
add a comment |
1 Answer
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Stephan Wahlbrink, the creator of StatET, recommended running this command at startup:
registerS3method("print", "help_files_with_topic", rj::print.help_files_with_topic)
I ran the command, and it solved the problem.
(Stephan added that the Derby errors that I saw in the logs were unrelated to the problem of displaying help in the "R Help" pane.)
answered Nov 19 '18 at 18:45
user697473user697473
615623
add a comment |
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1 Answer
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active
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oldest
votes
Stephan Wahlbrink, the creator of StatET, recommended running this command at startup:
registerS3method("print", "help_files_with_topic", rj::print.help_files_with_topic)
I ran the command, and it solved the problem.
(Stephan added that the Derby errors that I saw in the logs were unrelated to the problem of displaying help in the "R Help" pane.)
answered Nov 19 '18 at 18:45
user697473user697473
615623
add a comment |
Stephan Wahlbrink, the creator of StatET, recommended running this command at startup:
registerS3method("print", "help_files_with_topic", rj::print.help_files_with_topic)
I ran the command, and it solved the problem.
(Stephan added that the Derby errors that I saw in the logs were unrelated to the problem of displaying help in the "R Help" pane.)
answered Nov 19 '18 at 18:45
user697473user697473
615623
add a comment |
Stephan Wahlbrink, the creator of StatET, recommended running this command at startup:
registerS3method("print", "help_files_with_topic", rj::print.help_files_with_topic)
I ran the command, and it solved the problem.
(Stephan added that the Derby errors that I saw in the logs were unrelated to the problem of displaying help in the "R Help" pane.)
answered Nov 19 '18 at 18:45
user697473user697473
615623
Stephan Wahlbrink, the creator of StatET, recommended running this command at startup:
registerS3method("print", "help_files_with_topic", rj::print.help_files_with_topic)
I ran the command, and it solved the problem.
(Stephan added that the Derby errors that I saw in the logs were unrelated to the problem of displaying help in the "R Help" pane.)
answered Nov 19 '18 at 18:45
user697473user697473
615623
answered Nov 19 '18 at 18:45
user697473user697473
615623
answered Nov 19 '18 at 18:45
user697473user697473
615623
answered Nov 19 '18 at 18:45
user697473user697473
615623
615623
add a comment |
add a comment |
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