I want to carry out a join of a large Spark dataframe with a comparatively small dataframe
I am joining a Spark dataframe with 23 Million records with a dataframe having 0.5 Million records. The Broadcast join doesn't seem feasible as the smaller table won't fit into the memory to be distributed over all workers. Whenever I carry out the join, Spark halts at the shuffle task and doesn't continue. How should I go on with the join?
apache-spark apache-spark-sql left-join apache-spark-2.1
add a comment |
I am joining a Spark dataframe with 23 Million records with a dataframe having 0.5 Million records. The Broadcast join doesn't seem feasible as the smaller table won't fit into the memory to be distributed over all workers. Whenever I carry out the join, Spark halts at the shuffle task and doesn't continue. How should I go on with the join?
apache-spark apache-spark-sql left-join apache-spark-2.1
How many partitions do you have for your data? How long did you wait (as in an hour or so)? Just want to make sure it really halts and it's not just really slow :)
– Frank
Nov 22 '18 at 10:56
@Frank - The bigger dataframe had 400 partitions and the smaller one has 40 partitions. I waited for 2 hours or more but after that it threw an error that "Not able to write rows" and RemoteException. The error was that the data was not able to be written to datanodes.
– Anand Nautiyal
Nov 22 '18 at 12:43
@Frank - Can Repartitioning help with this case ?
– Anand Nautiyal
Nov 23 '18 at 4:34
How many CPU cores do you have where you execute your Spark program on? Also see stackoverflow.com/questions/35800795/… and spark.apache.org/docs/latest/tuning.html on this.
– Frank
Nov 23 '18 at 19:00
add a comment |
I am joining a Spark dataframe with 23 Million records with a dataframe having 0.5 Million records. The Broadcast join doesn't seem feasible as the smaller table won't fit into the memory to be distributed over all workers. Whenever I carry out the join, Spark halts at the shuffle task and doesn't continue. How should I go on with the join?
apache-spark apache-spark-sql left-join apache-spark-2.1
I am joining a Spark dataframe with 23 Million records with a dataframe having 0.5 Million records. The Broadcast join doesn't seem feasible as the smaller table won't fit into the memory to be distributed over all workers. Whenever I carry out the join, Spark halts at the shuffle task and doesn't continue. How should I go on with the join?
apache-spark apache-spark-sql left-join apache-spark-2.1
apache-spark apache-spark-sql left-join apache-spark-2.1
asked Nov 22 '18 at 9:39
Anand NautiyalAnand Nautiyal
316
316
How many partitions do you have for your data? How long did you wait (as in an hour or so)? Just want to make sure it really halts and it's not just really slow :)
– Frank
Nov 22 '18 at 10:56
@Frank - The bigger dataframe had 400 partitions and the smaller one has 40 partitions. I waited for 2 hours or more but after that it threw an error that "Not able to write rows" and RemoteException. The error was that the data was not able to be written to datanodes.
– Anand Nautiyal
Nov 22 '18 at 12:43
@Frank - Can Repartitioning help with this case ?
– Anand Nautiyal
Nov 23 '18 at 4:34
How many CPU cores do you have where you execute your Spark program on? Also see stackoverflow.com/questions/35800795/… and spark.apache.org/docs/latest/tuning.html on this.
– Frank
Nov 23 '18 at 19:00
add a comment |
How many partitions do you have for your data? How long did you wait (as in an hour or so)? Just want to make sure it really halts and it's not just really slow :)
– Frank
Nov 22 '18 at 10:56
@Frank - The bigger dataframe had 400 partitions and the smaller one has 40 partitions. I waited for 2 hours or more but after that it threw an error that "Not able to write rows" and RemoteException. The error was that the data was not able to be written to datanodes.
– Anand Nautiyal
Nov 22 '18 at 12:43
@Frank - Can Repartitioning help with this case ?
– Anand Nautiyal
Nov 23 '18 at 4:34
How many CPU cores do you have where you execute your Spark program on? Also see stackoverflow.com/questions/35800795/… and spark.apache.org/docs/latest/tuning.html on this.
– Frank
Nov 23 '18 at 19:00
How many partitions do you have for your data? How long did you wait (as in an hour or so)? Just want to make sure it really halts and it's not just really slow :)
– Frank
Nov 22 '18 at 10:56
How many partitions do you have for your data? How long did you wait (as in an hour or so)? Just want to make sure it really halts and it's not just really slow :)
– Frank
Nov 22 '18 at 10:56
@Frank - The bigger dataframe had 400 partitions and the smaller one has 40 partitions. I waited for 2 hours or more but after that it threw an error that "Not able to write rows" and RemoteException. The error was that the data was not able to be written to datanodes.
– Anand Nautiyal
Nov 22 '18 at 12:43
@Frank - The bigger dataframe had 400 partitions and the smaller one has 40 partitions. I waited for 2 hours or more but after that it threw an error that "Not able to write rows" and RemoteException. The error was that the data was not able to be written to datanodes.
– Anand Nautiyal
Nov 22 '18 at 12:43
@Frank - Can Repartitioning help with this case ?
– Anand Nautiyal
Nov 23 '18 at 4:34
@Frank - Can Repartitioning help with this case ?
– Anand Nautiyal
Nov 23 '18 at 4:34
How many CPU cores do you have where you execute your Spark program on? Also see stackoverflow.com/questions/35800795/… and spark.apache.org/docs/latest/tuning.html on this.
– Frank
Nov 23 '18 at 19:00
How many CPU cores do you have where you execute your Spark program on? Also see stackoverflow.com/questions/35800795/… and spark.apache.org/docs/latest/tuning.html on this.
– Frank
Nov 23 '18 at 19:00
add a comment |
0
active
oldest
votes
Your Answer
StackExchange.ifUsing("editor", function () {
StackExchange.using("externalEditor", function () {
StackExchange.using("snippets", function () {
StackExchange.snippets.init();
});
});
}, "code-snippets");
StackExchange.ready(function() {
var channelOptions = {
tags: "".split(" "),
id: "1"
};
initTagRenderer("".split(" "), "".split(" "), channelOptions);
StackExchange.using("externalEditor", function() {
// Have to fire editor after snippets, if snippets enabled
if (StackExchange.settings.snippets.snippetsEnabled) {
StackExchange.using("snippets", function() {
createEditor();
});
}
else {
createEditor();
}
});
function createEditor() {
StackExchange.prepareEditor({
heartbeatType: 'answer',
autoActivateHeartbeat: false,
convertImagesToLinks: true,
noModals: true,
showLowRepImageUploadWarning: true,
reputationToPostImages: 10,
bindNavPrevention: true,
postfix: "",
imageUploader: {
brandingHtml: "Powered by u003ca class="icon-imgur-white" href="https://imgur.com/"u003eu003c/au003e",
contentPolicyHtml: "User contributions licensed under u003ca href="https://creativecommons.org/licenses/by-sa/3.0/"u003ecc by-sa 3.0 with attribution requiredu003c/au003e u003ca href="https://stackoverflow.com/legal/content-policy"u003e(content policy)u003c/au003e",
allowUrls: true
},
onDemand: true,
discardSelector: ".discard-answer"
,immediatelyShowMarkdownHelp:true
});
}
});
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
StackExchange.ready(
function () {
StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f53427887%2fi-want-to-carry-out-a-join-of-a-large-spark-dataframe-with-a-comparatively-small%23new-answer', 'question_page');
}
);
Post as a guest
Required, but never shown
0
active
oldest
votes
0
active
oldest
votes
active
oldest
votes
active
oldest
votes
Thanks for contributing an answer to Stack Overflow!
- Please be sure to answer the question. Provide details and share your research!
But avoid …
- Asking for help, clarification, or responding to other answers.
- Making statements based on opinion; back them up with references or personal experience.
To learn more, see our tips on writing great answers.
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
StackExchange.ready(
function () {
StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f53427887%2fi-want-to-carry-out-a-join-of-a-large-spark-dataframe-with-a-comparatively-small%23new-answer', 'question_page');
}
);
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Sign up or log in
StackExchange.ready(function () {
StackExchange.helpers.onClickDraftSave('#login-link');
});
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Sign up using Google
Sign up using Facebook
Sign up using Email and Password
Post as a guest
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
Required, but never shown
How many partitions do you have for your data? How long did you wait (as in an hour or so)? Just want to make sure it really halts and it's not just really slow :)
– Frank
Nov 22 '18 at 10:56
@Frank - The bigger dataframe had 400 partitions and the smaller one has 40 partitions. I waited for 2 hours or more but after that it threw an error that "Not able to write rows" and RemoteException. The error was that the data was not able to be written to datanodes.
– Anand Nautiyal
Nov 22 '18 at 12:43
@Frank - Can Repartitioning help with this case ?
– Anand Nautiyal
Nov 23 '18 at 4:34
How many CPU cores do you have where you execute your Spark program on? Also see stackoverflow.com/questions/35800795/… and spark.apache.org/docs/latest/tuning.html on this.
– Frank
Nov 23 '18 at 19:00