Mixing
Unable to create nested json output (aggregated) from CSV input
1
Issue I am facing is I need aggregation of CSV inputs on ID, and it contains multiple nesting. I am able to perform single nesting, but on further nesting, I am not able to write correct syntax.
INPUT:
input {
generator {
id => "first"
type => 'csv'
message => '829cd0e0-8d24-4f25-92e1-724e6bd811e0,GSIH1,2017-10-10 00:00:00.000,HCC,0.83,COMMUNITYID1'
count => 1
}
generator {
id => "second"
type => 'csv'
message => '829cd0e0-8d24-4f25-92e1-724e6bd811e0,GSIH1,2017-10-10 00:00:00.000,LACE,12,COMMUNITYID1'
count => 1
}
generator {
id => "third"
type => 'csv'
message => '829cd0e0-8d24-4f25-92e1-724e6bd811e0,GSIH1,2017-10-10 00:00:00.000,CCI,0.23,COMMUNITYID1'
count => 1
}
}
filter
{
csv {
columns => ['id', 'reference', 'occurrenceDateTime', 'code', 'probabilityDecimal', 'comment']
}
mutate {
rename => {
"reference" => "[subject][reference]"
"code" => "[prediction][outcome][coding][code]"
"probabilityDecimal" => "[prediction][probabilityDecimal]"
}
}
mutate {
add_field => {
"[resourceType]" => "RiskAssessment"
"[prediction][outcome][text]" => "Member HCC score based on CMS HCC V22 risk adjustment model"
"[status]" => "final"
}
}
mutate {
update => {
"[subject][reference]" => "Patient/%{[subject][reference]}"
"[comment]" => "CommunityId/%{[comment]}"
}
}
mutate {
remove_field => [ "@timestamp", "sequence", "@version", "message", "host", "type" ]
}
}
filter {
aggregate {
task_id => "%{id}"
code => "
map['resourceType'] = event.get('resourceType')
map['id'] = event.get('id')
map['status'] = event.get('status')
map['occurrenceDateTime'] = event.get('occurrenceDateTime')
map['comment'] = event.get('comment')
map['[reference]'] = event.get('[subject][reference]')
map['[prediction]'] ||=
map['[prediction]'] << {
'code' => event.get('[prediction][outcome][coding][code]'),
'text' => event.get('[prediction][outcome][text]'),
'probabilityDecimal'=> event.get('[prediction][probabilityDecimal]')
}
event.cancel()
"
push_previous_map_as_event => true
timeout => 3
}
mutate {
remove_field => [ "@timestamp", "tags", "@version"]
}
}
output{
elasticsearch {
template => "templates/riskFactor.json"
template_name => "riskFactor"
action => "index"
hosts => ["localhost:9201"]
index => ["deepak"]
}
stdout {
codec => json{}
}
}
OUTPUT:
{
"reference": "Patient/GSIH1",
"comment": "CommunityId/COMMUNITYID1",
"id": "829cd0e0-8d24-4f25-92e1-724e6bd811e0",
"status": "final",
"resourceType": "RiskAssessment",
"occurrenceDateTime": "2017-10-10 00:00:00.000",
"prediction": [
{
"probabilityDecimal": "0.83",
"code": "HCC",
"text": "Member HCC score based on CMS HCC V22 risk adjustment model"
},
{
"probabilityDecimal": "0.23",
"code": "CCI",
"text": "Member HCC score based on CMS HCC V22 risk adjustment model"
},
{
"probabilityDecimal": "12",
"code": "LACE",
"text": "Member HCC score based on CMS HCC V22 risk adjustment model"
}
]
}
REQUIRED OUTPUT:
{
"resourceType": "RiskAssessment",
"id": "829cd0e0-8d24-4f25-92e1-724e6bd811e0",
"status": "final",
"subject": {
"reference": "Patient/GSIH1"
},
"occurrenceDateTime": "2017-10-10 00:00:00.000",
"prediction": [
{
"outcome": {
"coding": [
{
"code": "HCC"
}
],
"text": "Member HCC score based on CMS HCC V22 risk adjustment model"
},
"probabilityDecimal": 0.83
},
{
"outcome": {
"coding": [
{
"code": "CCI"
}
],
"text": "Member HCC score based on CMS HCC V22 risk adjustment model"
},
"probabilityDecimal": 0.83
}
],
"comment": "CommunityId/COMMUNITYID1"
}
elasticsearch logstash aggregate
edited Jan 25 at 11:27
James Z
11.2k71936
asked Jan 2 at 10:12
Deepak SinghalDeepak Singhal
84
add a comment |
1
Issue I am facing is I need aggregation of CSV inputs on ID, and it contains multiple nesting. I am able to perform single nesting, but on further nesting, I am not able to write correct syntax.
INPUT:
input {
generator {
id => "first"
type => 'csv'
message => '829cd0e0-8d24-4f25-92e1-724e6bd811e0,GSIH1,2017-10-10 00:00:00.000,HCC,0.83,COMMUNITYID1'
count => 1
}
generator {
id => "second"
type => 'csv'
message => '829cd0e0-8d24-4f25-92e1-724e6bd811e0,GSIH1,2017-10-10 00:00:00.000,LACE,12,COMMUNITYID1'
count => 1
}
generator {
id => "third"
type => 'csv'
message => '829cd0e0-8d24-4f25-92e1-724e6bd811e0,GSIH1,2017-10-10 00:00:00.000,CCI,0.23,COMMUNITYID1'
count => 1
}
}
filter
{
csv {
columns => ['id', 'reference', 'occurrenceDateTime', 'code', 'probabilityDecimal', 'comment']
}
mutate {
rename => {
"reference" => "[subject][reference]"
"code" => "[prediction][outcome][coding][code]"
"probabilityDecimal" => "[prediction][probabilityDecimal]"
}
}
mutate {
add_field => {
"[resourceType]" => "RiskAssessment"
"[prediction][outcome][text]" => "Member HCC score based on CMS HCC V22 risk adjustment model"
"[status]" => "final"
}
}
mutate {
update => {
"[subject][reference]" => "Patient/%{[subject][reference]}"
"[comment]" => "CommunityId/%{[comment]}"
}
}
mutate {
remove_field => [ "@timestamp", "sequence", "@version", "message", "host", "type" ]
}
}
filter {
aggregate {
task_id => "%{id}"
code => "
map['resourceType'] = event.get('resourceType')
map['id'] = event.get('id')
map['status'] = event.get('status')
map['occurrenceDateTime'] = event.get('occurrenceDateTime')
map['comment'] = event.get('comment')
map['[reference]'] = event.get('[subject][reference]')
map['[prediction]'] ||=
map['[prediction]'] << {
'code' => event.get('[prediction][outcome][coding][code]'),
'text' => event.get('[prediction][outcome][text]'),
'probabilityDecimal'=> event.get('[prediction][probabilityDecimal]')
}
event.cancel()
"
push_previous_map_as_event => true
timeout => 3
}
mutate {
remove_field => [ "@timestamp", "tags", "@version"]
}
}
output{
elasticsearch {
template => "templates/riskFactor.json"
template_name => "riskFactor"
action => "index"
hosts => ["localhost:9201"]
index => ["deepak"]
}
stdout {
codec => json{}
}
}
OUTPUT:
{
"reference": "Patient/GSIH1",
"comment": "CommunityId/COMMUNITYID1",
"id": "829cd0e0-8d24-4f25-92e1-724e6bd811e0",
"status": "final",
"resourceType": "RiskAssessment",
"occurrenceDateTime": "2017-10-10 00:00:00.000",
"prediction": [
{
"probabilityDecimal": "0.83",
"code": "HCC",
"text": "Member HCC score based on CMS HCC V22 risk adjustment model"
},
{
"probabilityDecimal": "0.23",
"code": "CCI",
"text": "Member HCC score based on CMS HCC V22 risk adjustment model"
},
{
"probabilityDecimal": "12",
"code": "LACE",
"text": "Member HCC score based on CMS HCC V22 risk adjustment model"
}
]
}
REQUIRED OUTPUT:
{
"resourceType": "RiskAssessment",
"id": "829cd0e0-8d24-4f25-92e1-724e6bd811e0",
"status": "final",
"subject": {
"reference": "Patient/GSIH1"
},
"occurrenceDateTime": "2017-10-10 00:00:00.000",
"prediction": [
{
"outcome": {
"coding": [
{
"code": "HCC"
}
],
"text": "Member HCC score based on CMS HCC V22 risk adjustment model"
},
"probabilityDecimal": 0.83
},
{
"outcome": {
"coding": [
{
"code": "CCI"
}
],
"text": "Member HCC score based on CMS HCC V22 risk adjustment model"
},
"probabilityDecimal": 0.83
}
],
"comment": "CommunityId/COMMUNITYID1"
}
elasticsearch logstash aggregate
edited Jan 25 at 11:27
James Z
11.2k71936
asked Jan 2 at 10:12
Deepak SinghalDeepak Singhal
84
- Can you possibly provide only the essential JSON? It is entirely too much to read.
– AlvinfromDiaspar
Jan 2 at 12:12
Also, what is "PFA"? Can't you spell it out instead of using shortcuts like this?
– AlvinfromDiaspar
Jan 2 at 12:13
I have inserted complete json input to provide a better understanding, and I have used PFA (Please find attached) hoping that its popular enough abbreviations to get my query clear. Any updates on the answer ? @AlvinfromDiaspar
– Deepak Singhal
Jan 3 at 6:14
add a comment |
1
1
1
Issue I am facing is I need aggregation of CSV inputs on ID, and it contains multiple nesting. I am able to perform single nesting, but on further nesting, I am not able to write correct syntax.
INPUT:
input {
generator {
id => "first"
type => 'csv'
message => '829cd0e0-8d24-4f25-92e1-724e6bd811e0,GSIH1,2017-10-10 00:00:00.000,HCC,0.83,COMMUNITYID1'
count => 1
}
generator {
id => "second"
type => 'csv'
message => '829cd0e0-8d24-4f25-92e1-724e6bd811e0,GSIH1,2017-10-10 00:00:00.000,LACE,12,COMMUNITYID1'
count => 1
}
generator {
id => "third"
type => 'csv'
message => '829cd0e0-8d24-4f25-92e1-724e6bd811e0,GSIH1,2017-10-10 00:00:00.000,CCI,0.23,COMMUNITYID1'
count => 1
}
}
filter
{
csv {
columns => ['id', 'reference', 'occurrenceDateTime', 'code', 'probabilityDecimal', 'comment']
}
mutate {
rename => {
"reference" => "[subject][reference]"
"code" => "[prediction][outcome][coding][code]"
"probabilityDecimal" => "[prediction][probabilityDecimal]"
}
}
mutate {
add_field => {
"[resourceType]" => "RiskAssessment"
"[prediction][outcome][text]" => "Member HCC score based on CMS HCC V22 risk adjustment model"
"[status]" => "final"
}
}
mutate {
update => {
"[subject][reference]" => "Patient/%{[subject][reference]}"
"[comment]" => "CommunityId/%{[comment]}"
}
}
mutate {
remove_field => [ "@timestamp", "sequence", "@version", "message", "host", "type" ]
}
}
filter {
aggregate {
task_id => "%{id}"
code => "
map['resourceType'] = event.get('resourceType')
map['id'] = event.get('id')
map['status'] = event.get('status')
map['occurrenceDateTime'] = event.get('occurrenceDateTime')
map['comment'] = event.get('comment')
map['[reference]'] = event.get('[subject][reference]')
map['[prediction]'] ||=
map['[prediction]'] << {
'code' => event.get('[prediction][outcome][coding][code]'),
'text' => event.get('[prediction][outcome][text]'),
'probabilityDecimal'=> event.get('[prediction][probabilityDecimal]')
}
event.cancel()
"
push_previous_map_as_event => true
timeout => 3
}
mutate {
remove_field => [ "@timestamp", "tags", "@version"]
}
}
output{
elasticsearch {
template => "templates/riskFactor.json"
template_name => "riskFactor"
action => "index"
hosts => ["localhost:9201"]
index => ["deepak"]
}
stdout {
codec => json{}
}
}
OUTPUT:
{
"reference": "Patient/GSIH1",
"comment": "CommunityId/COMMUNITYID1",
"id": "829cd0e0-8d24-4f25-92e1-724e6bd811e0",
"status": "final",
"resourceType": "RiskAssessment",
"occurrenceDateTime": "2017-10-10 00:00:00.000",
"prediction": [
{
"probabilityDecimal": "0.83",
"code": "HCC",
"text": "Member HCC score based on CMS HCC V22 risk adjustment model"
},
{
"probabilityDecimal": "0.23",
"code": "CCI",
"text": "Member HCC score based on CMS HCC V22 risk adjustment model"
},
{
"probabilityDecimal": "12",
"code": "LACE",
"text": "Member HCC score based on CMS HCC V22 risk adjustment model"
}
]
}
REQUIRED OUTPUT:
{
"resourceType": "RiskAssessment",
"id": "829cd0e0-8d24-4f25-92e1-724e6bd811e0",
"status": "final",
"subject": {
"reference": "Patient/GSIH1"
},
"occurrenceDateTime": "2017-10-10 00:00:00.000",
"prediction": [
{
"outcome": {
"coding": [
{
"code": "HCC"
}
],
"text": "Member HCC score based on CMS HCC V22 risk adjustment model"
},
"probabilityDecimal": 0.83
},
{
"outcome": {
"coding": [
{
"code": "CCI"
}
],
"text": "Member HCC score based on CMS HCC V22 risk adjustment model"
},
"probabilityDecimal": 0.83
}
],
"comment": "CommunityId/COMMUNITYID1"
}
elasticsearch logstash aggregate
edited Jan 25 at 11:27
James Z
11.2k71936
asked Jan 2 at 10:12
Deepak SinghalDeepak Singhal
84
Issue I am facing is I need aggregation of CSV inputs on ID, and it contains multiple nesting. I am able to perform single nesting, but on further nesting, I am not able to write correct syntax.
INPUT:
input {
generator {
id => "first"
type => 'csv'
message => '829cd0e0-8d24-4f25-92e1-724e6bd811e0,GSIH1,2017-10-10 00:00:00.000,HCC,0.83,COMMUNITYID1'
count => 1
}
generator {
id => "second"
type => 'csv'
message => '829cd0e0-8d24-4f25-92e1-724e6bd811e0,GSIH1,2017-10-10 00:00:00.000,LACE,12,COMMUNITYID1'
count => 1
}
generator {
id => "third"
type => 'csv'
message => '829cd0e0-8d24-4f25-92e1-724e6bd811e0,GSIH1,2017-10-10 00:00:00.000,CCI,0.23,COMMUNITYID1'
count => 1
}
}
filter
{
csv {
columns => ['id', 'reference', 'occurrenceDateTime', 'code', 'probabilityDecimal', 'comment']
}
mutate {
rename => {
"reference" => "[subject][reference]"
"code" => "[prediction][outcome][coding][code]"
"probabilityDecimal" => "[prediction][probabilityDecimal]"
}
}
mutate {
add_field => {
"[resourceType]" => "RiskAssessment"
"[prediction][outcome][text]" => "Member HCC score based on CMS HCC V22 risk adjustment model"
"[status]" => "final"
}
}
mutate {
update => {
"[subject][reference]" => "Patient/%{[subject][reference]}"
"[comment]" => "CommunityId/%{[comment]}"
}
}
mutate {
remove_field => [ "@timestamp", "sequence", "@version", "message", "host", "type" ]
}
}
filter {
aggregate {
task_id => "%{id}"
code => "
map['resourceType'] = event.get('resourceType')
map['id'] = event.get('id')
map['status'] = event.get('status')
map['occurrenceDateTime'] = event.get('occurrenceDateTime')
map['comment'] = event.get('comment')
map['[reference]'] = event.get('[subject][reference]')
map['[prediction]'] ||=
map['[prediction]'] << {
'code' => event.get('[prediction][outcome][coding][code]'),
'text' => event.get('[prediction][outcome][text]'),
'probabilityDecimal'=> event.get('[prediction][probabilityDecimal]')
}
event.cancel()
"
push_previous_map_as_event => true
timeout => 3
}
mutate {
remove_field => [ "@timestamp", "tags", "@version"]
}
}
output{
elasticsearch {
template => "templates/riskFactor.json"
template_name => "riskFactor"
action => "index"
hosts => ["localhost:9201"]
index => ["deepak"]
}
stdout {
codec => json{}
}
}
OUTPUT:
{
"reference": "Patient/GSIH1",
"comment": "CommunityId/COMMUNITYID1",
"id": "829cd0e0-8d24-4f25-92e1-724e6bd811e0",
"status": "final",
"resourceType": "RiskAssessment",
"occurrenceDateTime": "2017-10-10 00:00:00.000",
"prediction": [
{
"probabilityDecimal": "0.83",
"code": "HCC",
"text": "Member HCC score based on CMS HCC V22 risk adjustment model"
},
{
"probabilityDecimal": "0.23",
"code": "CCI",
"text": "Member HCC score based on CMS HCC V22 risk adjustment model"
},
{
"probabilityDecimal": "12",
"code": "LACE",
"text": "Member HCC score based on CMS HCC V22 risk adjustment model"
}
]
}
REQUIRED OUTPUT:
{
"resourceType": "RiskAssessment",
"id": "829cd0e0-8d24-4f25-92e1-724e6bd811e0",
"status": "final",
"subject": {
"reference": "Patient/GSIH1"
},
"occurrenceDateTime": "2017-10-10 00:00:00.000",
"prediction": [
{
"outcome": {
"coding": [
{
"code": "HCC"
}
],
"text": "Member HCC score based on CMS HCC V22 risk adjustment model"
},
"probabilityDecimal": 0.83
},
{
"outcome": {
"coding": [
{
"code": "CCI"
}
],
"text": "Member HCC score based on CMS HCC V22 risk adjustment model"
},
"probabilityDecimal": 0.83
}
],
"comment": "CommunityId/COMMUNITYID1"
}
elasticsearch logstash aggregate
elasticsearch logstash aggregate
edited Jan 25 at 11:27
James Z
11.2k71936
asked Jan 2 at 10:12
Deepak SinghalDeepak Singhal
84
edited Jan 25 at 11:27
James Z
11.2k71936
asked Jan 2 at 10:12
Deepak SinghalDeepak Singhal
84
edited Jan 25 at 11:27
James Z
11.2k71936
edited Jan 25 at 11:27
James Z
11.2k71936
edited Jan 25 at 11:27
James Z
11.2k71936
11.2k71936
asked Jan 2 at 10:12
Deepak SinghalDeepak Singhal
84
asked Jan 2 at 10:12
Deepak SinghalDeepak Singhal
84
asked Jan 2 at 10:12
Deepak SinghalDeepak Singhal
84
84
- Can you possibly provide only the essential JSON? It is entirely too much to read.
– AlvinfromDiaspar
Jan 2 at 12:12
Also, what is "PFA"? Can't you spell it out instead of using shortcuts like this?
– AlvinfromDiaspar
Jan 2 at 12:13
I have inserted complete json input to provide a better understanding, and I have used PFA (Please find attached) hoping that its popular enough abbreviations to get my query clear. Any updates on the answer ? @AlvinfromDiaspar
– Deepak Singhal
Jan 3 at 6:14
add a comment |
- Can you possibly provide only the essential JSON? It is entirely too much to read.
– AlvinfromDiaspar
Jan 2 at 12:12
Also, what is "PFA"? Can't you spell it out instead of using shortcuts like this?
– AlvinfromDiaspar
Jan 2 at 12:13
I have inserted complete json input to provide a better understanding, and I have used PFA (Please find attached) hoping that its popular enough abbreviations to get my query clear. Any updates on the answer ? @AlvinfromDiaspar
– Deepak Singhal
Jan 3 at 6:14
- Can you possibly provide only the essential JSON? It is entirely too much to read.
– AlvinfromDiaspar
Jan 2 at 12:12
- Can you possibly provide only the essential JSON? It is entirely too much to read.
– AlvinfromDiaspar
Jan 2 at 12:12
Also, what is "PFA"? Can't you spell it out instead of using shortcuts like this?
– AlvinfromDiaspar
Jan 2 at 12:13
Also, what is "PFA"? Can't you spell it out instead of using shortcuts like this?
– AlvinfromDiaspar
Jan 2 at 12:13
I have inserted complete json input to provide a better understanding, and I have used PFA (Please find attached) hoping that its popular enough abbreviations to get my query clear. Any updates on the answer ? @AlvinfromDiaspar
– Deepak Singhal
Jan 3 at 6:14
I have inserted complete json input to provide a better understanding, and I have used PFA (Please find attached) hoping that its popular enough abbreviations to get my query clear. Any updates on the answer ? @AlvinfromDiaspar
– Deepak Singhal
Jan 3 at 6:14
add a comment |
0
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- Can you possibly provide only the essential JSON? It is entirely too much to read.
– AlvinfromDiaspar
Jan 2 at 12:12
Also, what is "PFA"? Can't you spell it out instead of using shortcuts like this?
– AlvinfromDiaspar
Jan 2 at 12:13
I have inserted complete json input to provide a better understanding, and I have used PFA (Please find attached) hoping that its popular enough abbreviations to get my query clear. Any updates on the answer ? @AlvinfromDiaspar
– Deepak Singhal
Jan 3 at 6:14